View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_high_32 (Length: 313)

Name: NF9893_high_32
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_high_32
NF9893_high_32
[»] chr1 (2 HSPs)
chr1 (1-297)||(574175-574467)
chr1 (5-39)||(30780985-30781019)
[»] chr3 (2 HSPs)
chr3 (1-213)||(49245176-49245387)
chr3 (4-39)||(45297561-45297596)
[»] chr6 (2 HSPs)
chr6 (244-297)||(2471872-2471925)
chr6 (5-39)||(28975353-28975387)
[»] chr5 (1 HSPs)
chr5 (244-297)||(8980981-8981034)
[»] chr4 (2 HSPs)
chr4 (244-297)||(27135071-27135124)
chr4 (48-101)||(17083965-17084018)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 574467 - 574175
Alignment:
Q  1 taatatgggaaaggagagttgtttcctatcatgggaaagnnnnnnncaaccattagattacatagaaacattgatcttactatagtttgtctacactata 100  Q
    ||||||| ||||||||||||||||  |||||| ||||||       ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  574467 taatatgagaaaggagagttgttttttatcataggaaagtttttttcaaccattaaattacatagaaacattgatcttactatagtcagtctacactata 574368  T
Q  101 tctttataacttgtcttcaacctacctagtccctaccatcttcctctttttcagatcctgaatttttgttcagctaccttggtttcttagtgtttttccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  574367 tctttataacttgtcttcaacctacctagtccctaccatctccctctttttcagatcctgaatttttgtttagctaccttggtttcttagtgtttttccc 574268  T
Q  201 aatcattgctcatnnnnnnnnnnnnnttgtattatatttataccaaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtact 297  Q
    |  ||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  574267 atccattgctcat----aaaaaaaaattgtattatatttataccaaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtact 574175  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 30781019 - 30780985
Alignment:
Q  5 atgggaaaggagagttgtttcctatcatgggaaag 39  Q
    |||||||||||||||||||||| ||||||||||||    
T  30781019 atgggaaaggagagttgtttcccatcatgggaaag 30780985  T

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Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 49245387 - 49245176
Alignment:
Q  1 taatatgggaaaggagagttgtttcctatcatgggaaagnnnnnnncaaccattagattacatagaaacattgatcttactatagtttgtctacactata 100  Q
    ||||||| |||||||||||| |||   ||||||| ||||       ||||||||| ||||||||| ||||||||| ||| |||||| || ||||| ||||    
T  49245387 taatatgcgaaaggagagttatttttcatcatggaaaagtttttttcaaccattaaattacataggaacattgattttattatagtctgcctacattata 49245288  T
Q  101 tctttataacttgtcttcaacctacctagtccctaccatcttcctctttttcagatcctgaatttttgttcagctaccttggtttcttagtgtttttccc 200  Q
    ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||    
T  49245287 tctttataacttgtcttcaacgtacgtagtccctaccatctccctctttttcagat-ctgaatttttgtttaactaccttggtttcttagtgtttttccc 49245189  T
Q  201 aatcattgctcat 213  Q
    |  ||||||||||    
T  49245188 atccattgctcat 49245176  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 45297561 - 45297596
Alignment:
Q  4 tatgggaaaggagagttgtttcctatcatgggaaag 39  Q
    ||||||||||||||||||||||| ||||||||||||    
T  45297561 tatgggaaaggagagttgtttcccatcatgggaaag 45297596  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 2471925 - 2471872
Alignment:
Q  244 caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtact 297  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2471925 caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtact 2471872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 28975353 - 28975387
Alignment:
Q  5 atgggaaaggagagttgtttcctatcatgggaaag 39  Q
    |||||||||||||||||||||||||||||| ||||    
T  28975353 atgggaaaggagagttgtttcctatcatggaaaag 28975387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 8980981 - 8981034
Alignment:
Q  244 caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtact 297  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8980981 caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtact 8981034  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 27135124 - 27135071
Alignment:
Q  244 caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtact 297  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27135124 caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtact 27135071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 17084018 - 17083965
Alignment:
Q  48 aaccattagattacatagaaacattgatcttactatagtttgtctacactatat 101  Q
    ||||||||||||| | || |||||| |||||| ||||||||||||| |||||||    
T  17084018 aaccattagattaaaaaggaacattaatcttattatagtttgtctatactatat 17083965  T

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