View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_high_4 (Length: 532)

Name: NF9893_high_4
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_high_4
NF9893_high_4
[»] chr6 (4 HSPs)
chr6 (74-514)||(32312577-32313019)
chr6 (312-463)||(5642567-5642717)
chr6 (19-78)||(32300507-32300566)
chr6 (388-460)||(6368742-6368814)
[»] chr3 (7 HSPs)
chr3 (293-460)||(48847594-48847762)
chr3 (311-466)||(621996-622151)
chr3 (301-393)||(16118491-16118583)
chr3 (113-228)||(31335737-31335852)
chr3 (150-237)||(21505636-21505724)
chr3 (293-455)||(45675677-45675838)
chr3 (329-402)||(19322388-19322461)
[»] scaffold0065 (1 HSPs)
scaffold0065 (296-465)||(49461-49630)
[»] chr7 (4 HSPs)
chr7 (291-467)||(10201339-10201516)
chr7 (342-465)||(27933478-27933601)
chr7 (314-460)||(3946914-3947067)
chr7 (293-370)||(36424246-36424320)
[»] chr1 (9 HSPs)
chr1 (293-459)||(43292713-43292879)
chr1 (301-466)||(9607556-9607722)
chr1 (327-457)||(35998117-35998247)
chr1 (388-459)||(16473494-16473565)
chr1 (175-237)||(50845523-50845585)
chr1 (335-460)||(47555688-47555815)
chr1 (301-414)||(5502785-5502898)
chr1 (191-238)||(24563767-24563815)
chr1 (327-460)||(31133533-31133666)
[»] chr8 (5 HSPs)
chr8 (312-457)||(41146144-41146289)
chr8 (311-461)||(11246940-11247090)
chr8 (310-403)||(39396858-39396951)
chr8 (368-462)||(29471756-29471850)
chr8 (150-237)||(3318201-3318288)
[»] chr4 (4 HSPs)
chr4 (310-457)||(41921946-41922093)
chr4 (312-394)||(47331584-47331666)
chr4 (150-211)||(43055805-43055866)
chr4 (175-235)||(54372409-54372469)
[»] scaffold0095 (1 HSPs)
scaffold0095 (310-403)||(37850-37943)
[»] chr5 (7 HSPs)
chr5 (293-458)||(15150774-15150939)
chr5 (301-440)||(12429731-12429871)
chr5 (305-460)||(37018811-37018960)
chr5 (310-459)||(37060269-37060418)
chr5 (175-237)||(38268440-38268502)
chr5 (312-465)||(38153333-38153486)
chr5 (292-367)||(15156589-15156664)
[»] chr2 (5 HSPs)
chr2 (150-237)||(38433231-38433318)
chr2 (163-233)||(7863506-7863576)
chr2 (150-237)||(43832664-43832752)
chr2 (345-402)||(6807123-6807180)
chr2 (294-367)||(36639087-36639160)


Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 74 - 514
Target Start/End: Original strand, 32312577 - 32313019
Alignment:
Q  74 agaccaactaccagctagcatggtaaaagattcagactcat--cattttcattcaattgataataacaaaaagaaaaatttattctagttagaattattt 171  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32312577 agaccaactaccagctagcatggtaaaagattcagactcatatcattttcattcaattgataataacaaaaagaaaaatttattctagttagaattattt 32312676  T
Q  172 ttctgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaacagattctgtcattctttcctacaggctacatctac 271  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32312677 ttctgtttattcaattccaccgagttttgggaattctttcttgtaccaaaagaaaggttcctaacagattctgtcattctttcctacaggctacatctac 32312776  T
Q  272 ttgcctaatagtattacagttagtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctag 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32312777 ttgcctaatagtattacagttagtgtctatttggtacggcgtttgcaaaacggactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctag 32312876  T
Q  372 tatctgaagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgcttaattgtt 471  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32312877 tatctggagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgcttaattgtt 32312976  T
Q  472 ttaatttataactgctttaccagatatgtaactgtttacattg 514  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32312977 ttaatttataactgctttaccagatatgtaactgtttacattg 32313019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 312 - 463
Target Start/End: Original strand, 5642567 - 5642717
Alignment:
Q  312 gtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattgga 411  Q
    ||||| ||||| || ||| ||| |||||||| |||||| | | | ||||||||||| |||||| |||| ||| ||||||||| || ||||| | |||||     
T  5642567 gtttgtaaaacggagtttaatgaaaatcacgacaaaaatc-acgctagcgtagaagttagtatttgaaacttctggaaatcatggtaaaaatatattggg 5642665  T
Q  412 aagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgct 463  Q
    || ||||||||  || |||||| |||||| ||||||||| ||||||||||||    
T  5642666 aaacatgcaaatttggttttgtgtgttgcaaacgggaaatcaaacacacgct 5642717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 32300507 - 32300566
Alignment:
Q  19 agaagacacgaaaccattagacgaaacaagtatggtnnnnnnntttaagcagcttagacc 78  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  32300507 agaagacacgaaaccattagacgaaacaagtatggtaaaaaaatttaagcagcttagacc 32300566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 460
Target Start/End: Complemental strand, 6368814 - 6368742
Alignment:
Q  388 aaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacac 460  Q
    |||||||||||||||  ||| || |||| ||||||| ||||||| | |||||| |||| ||||||||||||||    
T  6368814 aaatcacggcaaaaatgcatcgggaagcgtgcaaacgtgcttttctgtgttgcaaacgtgaaaccaaacacac 6368742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 293 - 460
Target Start/End: Complemental strand, 48847762 - 48847594
Alignment:
Q  293 agtgtctatttggtacggcgtttgcaaaacagactttga-tggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaat 391  Q
    ||||||| |||||||| ||||||| |||||||| ||||| |||||||||||||||||||||| |||||||  |||| |||||| |||||||| || ||||    
T  48847762 agtgtctgtttggtacagcgtttgaaaaacagagtttgaatggaaatcacggcaaaaaaccacgttagcgaggaagttagtatttgaagcttgtgaaaat 48847663  T
Q  392 cacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacac 460  Q
    |||||||||||  ||| ||||| | |||||||||||||||||||||||| ||||| |||||||||||||    
T  48847662 cacggcaaaaatgcatcggaaaacgtgcaaacatgcttttgtatgttgcaaacggaaaaccaaacacac 48847594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 311 - 466
Target Start/End: Original strand, 621996 - 622151
Alignment:
Q  311 cgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattgg 410  Q
    ||||||||||| ||| ||||||| ||||||| ||||||||||| |||| ||||||||||||||| || |||||||  |||||||||||||||| ||| |     
T  621996 cgtttgcaaaatagagtttgatgaaaatcacagcaaaaaaccacgttaacgtagaagctagtatttggagcttttaaaaatcacggcaaaaacgcatcga 622095  T
Q  411 aaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgcttaa 466  Q
    | | ||||||||  |||||||||||||||| ||| ||||||||||| ||| |||||    
T  622096 ataacatgcaaatgtgcttttgtatgttgcaaacaggaaaccaaacccacacttaa 622151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 301 - 393
Target Start/End: Original strand, 16118491 - 16118583
Alignment:
Q  301 tttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatca 393  Q
    |||||||  |||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||    
T  16118491 tttggtatagcgtttgcaaaatagaatttgatggaaatcacgacaaaaaaccacgttagcgtagaagctagtatttggagcttttggaaatca 16118583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 31335737 - 31335852
Alignment:
Q  113 atcattttcattcaattgataataacaaaaagaaaaatttattctagttagaattatttttctgtttattcaattccacccagttttgggaattctttct 212  Q
    ||||||| |||||||||||||||| || |||||||  ||||||||| || ||||||||  |||| ||||||||||   ||||||||||| |||| |||||    
T  31335737 atcatttccattcaattgataataccagaaagaaagctttattctatttcgaattattcctctgcttattcaattttgcccagttttggcaattatttct 31335836  T
Q  213 tgtaccaaaagaaagg 228  Q
    | ||| ||||||||||    
T  31335837 tatacgaaaagaaagg 31335852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 21505724 - 21505636
Alignment:
Q  150 tttattctagttagaattatttttctgtttattcaattccacccagttttgggaattcttt-cttgtaccaaaagaaaggttcctaaca 237  Q
    |||||||||| |||||||||| | | ||||||||| |||  |||||||||||||||||||| | | |||||||||||||||||||||||    
T  21505724 tttattctagctagaattattctgcagtttattcatttctgcccagttttgggaattctttccatataccaaaagaaaggttcctaaca 21505636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 455
Target Start/End: Complemental strand, 45675838 - 45675677
Alignment:
Q  293 agtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatc 392  Q
    ||||||| |||||||  || |||| ||||| || |||||| |||||||||| ||||||||| ||||||||||||| |||||| ||||| || ||  ||||    
T  45675838 agtgtctgtttggtattgcttttgaaaaacggagtttgatagaaatcacggtaaaaaaccacgttagcgtagaagttagtatttgaagtttctgagaatc 45675739  T
Q  393 acggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaa 455  Q
    ||| ||||| || || | ||||  | ||||| || | |||| |||||| ||||||||||||||    
T  45675738 acgacaaaa-caaatcgaaaagtgtacaaacgtgttattgtgtgttgcaaacgggaaaccaaa 45675677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 402
Target Start/End: Complemental strand, 19322461 - 19322388
Alignment:
Q  329 tgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaa 402  Q
    |||||||||||| |||||||||||| ||||||| ||||| |||||| || || || ||||||||| ||||||||    
T  19322461 tgatggaaatcatggcaaaaaaccacgttagcgaagaagttagtatttggagtttatggaaatcatggcaaaaa 19322388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 296 - 465
Target Start/End: Complemental strand, 49630 - 49461
Alignment:
Q  296 gtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacg 395  Q
    |||||||| |||| ||||||||||||| || ||| ||| |||||||| ||||||||||||| |||||||||| |||||| |  ||||| | || |||| |    
T  49630 gtctatttagtacagcgtttgcaaaacggagtttaatgaaaatcacgacaaaaaaccatgtaagcgtagaagttagtatttagagcttctagagatcatg 49531  T
Q  396 gcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgctta 465  Q
    |||| ||| ||||| ||||| ||||||| ||||||||| | |||| ||||||||||||||||||| ||||    
T  49530 gcaacaacgcattgaaaagcgtgcaaacgtgcttttgtttattgcaaacgggaaaccaaacacacactta 49461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 291 - 467
Target Start/End: Original strand, 10201339 - 10201516
Alignment:
Q  291 ttagtgtctatttggtacggcgtttgcaaaacagacttt-gatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaa 389  Q
    ||||||| | |||||||  || |||||||||  |||||| | ||||||||||  ||||||| || |||||||||||||||||||| || |||||||||||    
T  10201339 ttagtgtttgtttggtattgcatttgcaaaatggacttttggtggaaatcacaacaaaaaatcacgttagcgtagaagctagtatttggagcttttggaa 10201438  T
Q  390 atcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgcttaat 467  Q
    ||||| ||||||| ||||  |||||| ||||||| || |||||| |||||| ||||| |||||||||||||| |||||    
T  10201439 atcacagcaaaaatacatcagaaagcgtgcaaacgtgattttgtgtgttgcaaacggaaaaccaaacacacgattaat 10201516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 465
Target Start/End: Complemental strand, 27933601 - 27933478
Alignment:
Q  342 ggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgct 441  Q
    ||||||||| ||  ||||||||||||||||||| |  ||||| || ||||||||| ||||| | || ||||| | || |||| ||||||||| ||||||     
T  27933601 ggcaaaaaatcacattagcgtagaagctagtatttagagcttctgaaaatcacggtaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgca 27933502  T
Q  442 aacgggaaaccaaacacacgctta 465  Q
    ||||||||| || ||| |||||||    
T  27933501 aacgggaaatcacacatacgctta 27933478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 460
Target Start/End: Original strand, 3946914 - 3947067
Alignment:
Q  314 ttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttgga-------aatcacggcaaaaacaca 406  Q
    |||||||||  | |||||| |||||||||||||||||| |||| || ||||||||| |||| || ||||| || |       | ||||| ||||||||||    
T  3946914 ttgcaaaacgaagtttgatagaaatcacggcaaaaaactatgtcagggtagaagctggtatttggagcttctgtagatcacgattcacgacaaaaacaca 3947013  T
Q  407 ttggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacac 460  Q
    |  | || | |||||| |||||||||| |||||| |||  ||||||||||||||    
T  3947014 tcaggaaacgtgcaaatatgcttttgtttgttgcaaacacgaaaccaaacacac 3947067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 36424320 - 36424246
Alignment:
Q  293 agtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcac-ggcaaaaaaccatgttagcgtagaagcta 370  Q
    ||||||| |||||||| || ||||||||||||| ||||||| ||||||| || ||||||    ||||||||||||||||    
T  36424320 agtgtctgtttggtactgcatttgcaaaacagagtttgatgaaaatcacagggaaaaaa----gttagcgtagaagcta 36424246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 293 - 459
Target Start/End: Original strand, 43292713 - 43292879
Alignment:
Q  293 agtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatc 392  Q
    ||||||||||| |  |||||||||  ||||||| ||||||||||||||||| |||||||||||||| |||| ||| |||||| || ||||| || |||||    
T  43292713 agtgtctatttagctcggcgtttgtcaaacagagtttgatggaaatcacggtaaaaaaccatgttaacgtaaaagttagtatttggagcttctgaaaatc 43292812  T
Q  393 acggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacaca 459  Q
    |||| ||||||| |   |||| ||||||||| ||||||||| || ||| ||| ||||||||||||||    
T  43292813 acggtaaaaacatacccgaaaacatgcaaacgtgcttttgtgtggtgcaaacaggaaaccaaacaca 43292879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 301 - 466
Target Start/End: Complemental strand, 9607722 - 9607556
Alignment:
Q  301 tttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaa-ccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaa 399  Q
    |||||||| ||||||||||||| |  ||||||| |||||||||||||||| ||| ||||||  ||||| |||||| |  ||||| |  |||| |||||||    
T  9607722 tttggtacagcgtttgcaaaacggtgtttgatgaaaatcacggcaaaaaaaccacgttagcaaagaagttagtatttagagcttctaaaaattacggcaa 9607623  T
Q  400 aaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgcttaa 466  Q
    |||||| |||  || ||||||||| ||||||||| ||| || ||||||||||||||||||| |||||    
T  9607622 aaacacgttgagaaacatgcaaacgtgcttttgtgtgtcgcaaacgggaaaccaaacacacacttaa 9607556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 457
Target Start/End: Original strand, 35998117 - 35998247
Alignment:
Q  327 tttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatg 426  Q
    |||||||||||||||| |||||||  | ||||||| ||||| |||||| || ||||| |  |||||||| ||||||| |||  | |||||||||||| ||    
T  35998117 tttgatggaaatcacgacaaaaaattacgttagcgaagaagttagtatttggagcttctaaaaatcacgacaaaaacgcatcaggaagcatgcaaacgtg 35998216  T
Q  427 cttttgtatgttgctaacgggaaaccaaaca 457  Q
    ||||||| | |||| ||||||||| ||||||    
T  35998217 cttttgtgtattgcaaacgggaaatcaaaca 35998247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 16473494 - 16473565
Alignment:
Q  388 aaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacaca 459  Q
    ||||||||| ||||||||||||  |||| ||||||| ||||||||||||||||  | |||||||||||||||    
T  16473494 aaatcacggaaaaaacacattgagaagcgtgcaaacgtgcttttgtatgttgcagatgggaaaccaaacaca 16473565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 50845585 - 50845523
Alignment:
Q  175 tgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaaca 237  Q
    ||||||||||||||  | |||||||| ||| |||||||| |||||||||||||||||||||||    
T  50845585 tgtttattcaattctgcacagttttgagaactctttcttataccaaaagaaaggttcctaaca 50845523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 460
Target Start/End: Original strand, 47555688 - 47555815
Alignment:
Q  335 aaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacgg--caaaaacacattggaaagcatgcaaacatgcttttg 432  Q
    |||||||  ||||||||||||||||  ||||||||| ||| |||| |||||| |||||||||   |||||||||||| ||| | || |||  || |||||    
T  47555688 aaatcacaacaaaaaaccatgttagtatagaagctaatatttgaaacttttgaaaatcacggaaaaaaaacacattgaaaaacgtgtaaatgtgattttg 47555787  T
Q  433 tatgttgctaacgggaaaccaaacacac 460  Q
      |||||| || ||||||||||||||||    
T  47555788 attgttgcaaatgggaaaccaaacacac 47555815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 414
Target Start/End: Complemental strand, 5502898 - 5502785
Alignment:
Q  301 tttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaa 400  Q
    |||||||| | ||||| |||| ||| |||||| ||||| |||  |||| |||||||||  ||||||| |||||| |  || ||||| |||||||| ||||    
T  5502898 tttggtactgtgtttgtaaaatagagtttgatagaaattacgataaaataccatgttaatgtagaagttagtatttagagtttttgaaaatcacgacaaa 5502799  T
Q  401 aacacattggaaag 414  Q
    || |||||||||||    
T  5502798 aatacattggaaag 5502785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 24563815 - 24563767
Alignment:
Q  191 cccagttttgggaattctttct-tgtaccaaaagaaaggttcctaacag 238  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||    
T  24563815 cccagttttgggaattctttctgtataccaaaagaaaggttactaacag 24563767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 460
Target Start/End: Original strand, 31133533 - 31133666
Alignment:
Q  327 tttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatg 426  Q
    ||||||| ||||||||| |||||| || ||||||||||||  |||||  |||| ||| |  |||| |||||||||| | || | |||  || ||||||||    
T  31133533 tttgatgaaaatcacggtaaaaaaacacgttagcgtagaaattagtacttgaaacttctaaaaataacggcaaaaataaatcgaaaaatatacaaacatg 31133632  T
Q  427 cttttgtatgttgctaacgggaaaccaaacacac 460  Q
     |||| ||| |||| ||| ||||| |||||||||    
T  31133633 tttttttatattgcaaacaggaaatcaaacacac 31133666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 312 - 457
Target Start/End: Original strand, 41146144 - 41146289
Alignment:
Q  312 gtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattgga 411  Q
    ||||||||||| || |||||| |||||||||||||||||||| |||| ||||||| ||||||| || ||||| ||  ||||||||||||||   || |||    
T  41146144 gtttgcaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacgtagaaactagtatttggagcttatgagaatcacggcaaaaatgtatcgga 41146243  T
Q  412 aagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaaca 457  Q
    |||| |||||  |||||||||| |||||| ||||||||||||||||    
T  41146244 aagcgtgcaagtatgcttttgtgtgttgcaaacgggaaaccaaaca 41146289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 461
Target Start/End: Complemental strand, 11247090 - 11246940
Alignment:
Q  311 cgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattgg 410  Q
    ||||||||||||  | ||||||||| ||||||||||||||| |  |||||| |||||||| ||| |||||||| || ||||||||  |||||||||||||    
T  11247090 cgtttgcaaaacgaagtttgatggagatcacggcaaaaaactactttagcgcagaagctaatatttgaagcttctgaaaatcacgataaaaacacattgg 11246991  T
Q  411 aaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacg 461  Q
     || | ||||||  || |||||| |||||| ||| | ||||||||||||||    
T  11246990 gaatcgtgcaaaagtgtttttgtgtgttgcaaacagaaaaccaaacacacg 11246940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 39396951 - 39396858
Alignment:
Q  310 gcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaac 403  Q
    |||||||||||||||  || |||||||||||||||||||||||| ||||||  |||||||||||| || ||||| || ||||||||||||||||    
T  39396951 gcgtttgcaaaacagtgttcgatggaaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatcacggcaaaaac 39396858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 462
Target Start/End: Original strand, 29471756 - 29471850
Alignment:
Q  368 ctagtatctgaagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgc 462  Q
    ||||||| |||||||| ||||||||||  ||||||  ||| || |||||||||||  ||||||| |||||||| ||||| |||||||||||||||    
T  29471756 ctagtatttgaagcttctggaaatcacaacaaaaatgcatcgggaagcatgcaaatgtgcttttatatgttgcaaacggaaaaccaaacacacgc 29471850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 3318288 - 3318201
Alignment:
Q  150 tttattctagttagaattatttttctgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaaca 237  Q
    |||||| | |||||| |||||| ||  || |||||| ||  |||||||||||||| |||||||||| |||| ||||||||||||||||    
T  3318288 tttattatggttagatttatttctcaattgattcaaatctgcccagttttgggaagtctttcttgtgccaagagaaaggttcctaaca 3318201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 310 - 457
Target Start/End: Complemental strand, 41922093 - 41921946
Alignment:
Q  310 gcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattg 409  Q
    ||||||| ||||| || |||||| |||||||||||||||||||| |||| | ||||||||||||| || ||||| ||  ||||||||||||||  |||||    
T  41922093 gcgtttgaaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacctagaagctagtatttggagcttatgagaatcacggcaaaaatgcattg 41921994  T
Q  410 gaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaaca 457  Q
    |||||  ||||||| || |||||| |||||| ||  ||||| ||||||    
T  41921993 gaaagtgtgcaaacgtgtttttgtgtgttgcaaagaggaaatcaaaca 41921946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 394
Target Start/End: Complemental strand, 47331666 - 47331584
Alignment:
Q  312 gtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcac 394  Q
    ||||| |||||| | ||||||| |||||||||||||||| ||  ||| | ||||||||||||| |||||||||| ||||||||    
T  47331666 gtttgtaaaacacaatttgatgaaaatcacggcaaaaaatcacattatcatagaagctagtatttgaagcttttagaaatcac 47331584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 43055866 - 43055805
Alignment:
Q  150 tttattctagttagaattatttttctgtttattcaattccacccagttttgggaattctttc 211  Q
    ||||||||||||||||| ||| |  | |||||||| |||  |||||||||||||||||||||    
T  43055866 tttattctagttagaatcattctcttatttattcatttctgcccagttttgggaattctttc 43055805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 54372409 - 54372469
Alignment:
Q  175 tgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaa 235  Q
    ||||||||||||||   |||||||||| || |||||  | |||||||||||||||||||||    
T  54372409 tgtttattcaattctgtccagttttggaaagtcttttctataccaaaagaaaggttcctaa 54372469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 37850 - 37943
Alignment:
Q  310 gcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaac 403  Q
    |||||||||||||||  || |||||||||||||||||||||||| ||||||  |||||||||||| || ||||| || ||||||||||||||||    
T  37850 gcgtttgcaaaacagtgttcgatggaaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatcacggcaaaaac 37943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 293 - 458
Target Start/End: Original strand, 15150774 - 15150939
Alignment:
Q  293 agtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatc 392  Q
    |||||||||||||||  ||||||| |||| ||  ||||||| |||||||| |||| ||||| |||||| |||||| |||||| |||| ||||| |||||     
T  15150774 agtgtctatttggtagagcgtttgaaaaatagggtttgatgaaaatcacgacaaacaaccacgttagcatagaagttagtatttgaaacttttagaaatt 15150873  T
Q  393 acggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacac 458  Q
    ||||||||||  ||||| ||||| || |||| || |||| | |||||| ||  |||||||||||||    
T  15150874 acggcaaaaatgcattgaaaagcgtgtaaacttgtttttatttgttgcaaagaggaaaccaaacac 15150939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 301 - 440
Target Start/End: Original strand, 12429731 - 12429871
Alignment:
Q  301 tttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaac-catgttagcgtagaagctagtatctgaagcttttggaaatcacggcaa 399  Q
    |||||||| | |||||||||||||  ||||||||||||||||||||||||| || ||||||| | ||||||| || |  ||||| |  ||||||||||||    
T  12429731 tttggtacagtgtttgcaaaacagtgtttgatggaaatcacggcaaaaaactcacgttagcgaataagctagaatttagagcttatcaaaatcacggcaa 12429830  T
Q  400 aaacacattggaaagcatgcaaacatgcttttgtatgttgc 440  Q
    |||  ||||||||||| ||||||| ||||||| | ||||||    
T  12429831 aaatgcattggaaagcgtgcaaacgtgcttttatgtgttgc 12429871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 460
Target Start/End: Original strand, 37018811 - 37018960
Alignment:
Q  305 gtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaaca 404  Q
    |||| ||||||||||| |||| |||||||||||| |||||||||||||| ||||||||||     |||||  | ||| | ||||||||||||||||| ||    
T  37018811 gtaccgcgtttgcaaagcagagtttgatggaaattacggcaaaaaaccacgttagcgtag-----agtattaggagc-tctggaaatcacggcaaaatca 37018904  T
Q  405 cattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacac 460  Q
    |||  |||||| | ||||||| ||||| | |||||| |||| ||||||||||||||    
T  37018905 catcagaaagcgtacaaacatacttttatgtgttgcaaacgcgaaaccaaacacac 37018960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 459
Target Start/End: Complemental strand, 37060418 - 37060269
Alignment:
Q  310 gcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattg 409  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||  ||||||| |||||| || ||||| |  || ||| | ||| ||| ||||     
T  37060418 gcgtttgcaaaacagagttggatggaaatcacggcaaaaaatcatgttaatgtagaagttagtatttggagcttctaaaattcatgacaataacgcattc 37060319  T
Q  410 gaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacaca 459  Q
    |||| |||||||||  | |||||| |||||| ||| | ||||||||||||    
T  37060318 gaaaacatgcaaacgcgtttttgtgtgttgcaaacagaaaaccaaacaca 37060269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 38268502 - 38268440
Alignment:
Q  175 tgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaaca 237  Q
    |||||||||||||| |||| ||||| ||||||||||||| ||||||| |||||||||||||||    
T  38268502 tgtttattcaattctacccggttttaggaattctttcttataccaaacgaaaggttcctaaca 38268440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 465
Target Start/End: Original strand, 38153333 - 38153486
Alignment:
Q  312 gtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattgga 411  Q
    |||||||| || || ||||||| || ||||||||||||| ||  ||| ||| ||||||||||| |||||||| || ||||||| ||||||| | || |      
T  38153333 gtttgcaagacggaatttgatgaaagtcacggcaaaaaatcagtttaacgtggaagctagtatttgaagcttctgcaaatcacagcaaaaagatatcgag 38153432  T
Q  412 aagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgctta 465  Q
    | || |  |||| || |||||| |||||  |||||||||||||||||| |||||    
T  38153433 aggcgtataaacgtgattttgtgtgttggaaacgggaaaccaaacacatgctta 38153486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 15156664 - 15156589
Alignment:
Q  292 tagtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaag 367  Q
    ||||||||  ||| ||| ||||||||||||| || |||||||||||| || |||||||| ||||||| ||||||||    
T  15156664 tagtgtctgattgatactgcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag 15156589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 38433231 - 38433318
Alignment:
Q  150 tttattctagttagaattatttttctgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaaca 237  Q
    |||||||||||||||| | || || ||||||||||| ||  ||| |||| |||||||||||||| || ||||||||||||| ||||||    
T  38433231 tttattctagttagaacttttcttttgtttattcaaatctgccctgtttagggaattctttcttatagcaaaagaaaggttgctaaca 38433318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 7863506 - 7863576
Alignment:
Q  163 gaattatttttctgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcct 233  Q
    ||||||||| ||  |||| |||||||  ||||||||| ||||| ||||||||||||||||||||| |||||    
T  7863506 gaattatttctcattttactcaattctgcccagtttttggaatactttcttgtaccaaaagaaagattcct 7863576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 43832752 - 43832664
Alignment:
Q  150 tttattctagttagaattatttttctgtttattcaattccacccagttttgggaattcttt-cttgtaccaaaagaaaggttcctaaca 237  Q
    ||||||||||||||||| ||| |  ||||||||||| ||  | |||||||| ||||||||| | | || ||||||||||||||||||||    
T  43832752 tttattctagttagaatcattctcttgtttattcaaatctgctcagttttgagaattctttccatatatcaaaagaaaggttcctaaca 43832664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 6807180 - 6807123
Alignment:
Q  345 aaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaa 402  Q
    |||||||||||||  ||||||||||||||| |  ||||| |||||||||| |||||||    
T  6807180 aaaaaaccatgttgacgtagaagctagtatttagagcttctggaaatcacagcaaaaa 6807123  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 36639160 - 36639087
Alignment:
Q  294 gtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaag 367  Q
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T  36639160 gtgtctatttgatacaacgtttgcaaaacggagtttgatgaaaatcacaacaaaaaattatgttatcgtagaag 36639087  T

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