View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_high_41 (Length: 250)

Name: NF9893_high_41
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_high_41
NF9893_high_41
[»] chr3 (2 HSPs)
chr3 (17-213)||(32841056-32841253)
chr3 (48-112)||(52908563-52908627)
[»] chr5 (2 HSPs)
chr5 (1-74)||(594964-595037)
chr5 (48-105)||(18598191-18598248)
[»] chr8 (1 HSPs)
chr8 (6-120)||(8901546-8901660)
[»] chr7 (3 HSPs)
chr7 (48-112)||(47478656-47478720)
chr7 (29-136)||(21663089-21663196)
chr7 (72-120)||(32482593-32482641)
[»] chr1 (1 HSPs)
chr1 (48-112)||(19041824-19041888)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 32841056 - 32841253
Alignment:
Q  17 tttggcaggtggggcaacatcaagacgctcctttatgcaaatgttatggttgctttgtgtgtgggtgatgtggactgctcgtaataataagcagtttaat 116  Q
    ||||||||||||||||||||| || || | ||||||||||||| | ||||| ||||||||||||||  | |||| |||||||||||| ||||||||||||    
T  32841056 tttggcaggtggggcaacatctaggcgatgctttatgcaaatgctttggttactttgtgtgtgggttttatggaatgctcgtaataacaagcagtttaat 32841155  T
Q  117 aacataaatatttctattca-cagatgcttggaaaagtcaaaatcaattcttactggtggttgaaagcggccaaagcggtttatgtgctaggggttca 213  Q
    ||||  ||||| |||||||| |||||||||| |||||||||||| | |||||| ||||||||||||||||| || |||||| |||| |||||||||||    
T  32841156 aacactaatatatctattcaccagatgcttgaaaaagtcaaaattacttcttattggtggttgaaagcggctaatgcggttcatgtactaggggttca 32841253  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 52908563 - 52908627
Alignment:
Q  48 tttatgcaaatgttatggttgctttgtgtgtgggtgatgtggactgctcgtaataataagcagtt 112  Q
    ||||||||| | |||||||||  ||||||||||||| |||||||||  |||||||||| ||||||    
T  52908563 tttatgcaattattatggttggcttgtgtgtgggtgttgtggactgagcgtaataataggcagtt 52908627  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 594964 - 595037
Alignment:
Q  1 tccttcagtttacttgtttggcaggtggggcaacatcaagacgctcctttatgcaaatgttatggttgctttgt 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  594964 tccttcagtttacttgtttggcaggtggggcaacatcaagacgctcgtttatgcaaatgttatggttgctttgt 595037  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 18598191 - 18598248
Alignment:
Q  48 tttatgcaaatgttatggttgctttgtgtgtgggtgatgtggactgctcgtaataata 105  Q
    ||||||||| |||||||||||  || |||||||||| |||||||||  ||||||||||    
T  18598191 tttatgcaattgttatggttggcttatgtgtgggtgttgtggactgagcgtaataata 18598248  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 8901660 - 8901546
Alignment:
Q  6 cagtttacttgtttggcaggtggggcaacatcaagacgctcctttatgcaaatgttatggttgctttgtgtgtgggtgatgtggactgctcgtaataata 105  Q
    ||||| |||| ||||||||||||||||| |||||||| ||||||||||||| | || |||||  | | |||||||||| ||||||| |  ||||||||||    
T  8901660 cagttcacttatttggcaggtggggcaaaatcaagacactcctttatgcaacttttgtggttattatatgtgtgggtgttgtggaccgtccgtaataata 8901561  T
Q  106 agcagtttaataaca 120  Q
      |||||||| ||||    
T  8901560 gtcagtttaacaaca 8901546  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 47478720 - 47478656
Alignment:
Q  48 tttatgcaaatgttatggttgctttgtgtgtgggtgatgtggactgctcgtaataataagcagtt 112  Q
    ||||||||| |||||||||||  ||||||||||||| |||||||||  |||||||| | ||||||    
T  47478720 tttatgcaattgttatggttggcttgtgtgtgggtgttgtggactgagcgtaataacaggcagtt 47478656  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 21663089 - 21663196
Alignment:
Q  29 ggcaacatcaagacgctcctttatgcaaatgttatggttgctttgtgtgtgggtgatgtggactgctcgtaataataagcagtttaataacataaatatt 128  Q
    |||| |||| |||||||| ||||||||| | || ||| |  | |||||||||||| | |||||||  ||||||||||  |||||||||||||  || |||    
T  21663089 ggcagcatctagacgctcatttatgcaacttttgtggctcttatgtgtgtgggtgttatggactgaacgtaataatagacagtttaataacaccaaaatt 21663188  T
Q  129 tctattca 136  Q
    ||||||||    
T  21663189 tctattca 21663196  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 32482593 - 32482641
Alignment:
Q  72 tgtgtgtgggtgatgtggactgctcgtaataataagcagtttaataaca 120  Q
    |||||||||||| | |||||||  |||||||||| ||||||||||||||    
T  32482593 tgtgtgtgggtgttatggactgaacgtaataataggcagtttaataaca 32482641  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 19041888 - 19041824
Alignment:
Q  48 tttatgcaaatgttatggttgctttgtgtgtgggtgatgtggactgctcgtaataataagcagtt 112  Q
    ||||||||| |||||||||||  ||||||||||||| |||||||||  |||||||| | ||||||    
T  19041888 tttatgcaattgttatggttggcttgtgtgtgggtgttgtggactgagcgtaataacaggcagtt 19041824  T

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