View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_high_46 (Length: 244)

Name: NF9893_high_46
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_high_46
NF9893_high_46
[»] chr1 (18 HSPs)
chr1 (5-58)||(9595776-9595829)
chr1 (7-53)||(39179269-39179315)
chr1 (16-57)||(33991768-33991809)
chr1 (8-56)||(1523813-1523861)
chr1 (8-56)||(15464029-15464077)
chr1 (8-56)||(50247814-50247862)
chr1 (1-56)||(896312-896367)
chr1 (7-53)||(26940478-26940524)
chr1 (7-57)||(28718955-28719005)
chr1 (17-59)||(43571781-43571823)
chr1 (8-49)||(11017819-11017860)
chr1 (16-53)||(32299329-32299366)
chr1 (16-53)||(32300281-32300318)
chr1 (16-53)||(38795191-38795228)
chr1 (1-54)||(42161871-42161924)
chr1 (9-57)||(27499852-27499900)
chr1 (9-53)||(45565348-45565392)
chr1 (5-53)||(50476743-50476791)
[»] chr8 (8 HSPs)
chr8 (1-53)||(34148398-34148450)
chr8 (16-55)||(1941866-1941905)
chr8 (7-53)||(3404736-3404782)
chr8 (7-56)||(34272383-34272432)
chr8 (16-53)||(36906415-36906452)
chr8 (16-53)||(37659351-37659388)
chr8 (9-53)||(1942197-1942241)
chr8 (7-55)||(37659694-37659742)
[»] chr4 (12 HSPs)
chr4 (5-57)||(22845046-22845098)
chr4 (1-56)||(20534138-20534193)
chr4 (7-57)||(7182354-7182404)
chr4 (7-56)||(54806344-54806393)
chr4 (5-56)||(21357977-21358028)
chr4 (7-54)||(31340658-31340705)
chr4 (16-55)||(41844661-41844700)
chr4 (1-55)||(38366237-38366291)
chr4 (8-53)||(32648822-32648867)
chr4 (27-59)||(41363995-41364027)
chr4 (19-55)||(45899511-45899547)
chr4 (7-55)||(50641927-50641975)
[»] chr2 (18 HSPs)
chr2 (2-57)||(40357669-40357724)
chr2 (16-58)||(13765749-13765791)
chr2 (7-56)||(14008491-14008540)
chr2 (7-55)||(3120013-3120061)
chr2 (16-56)||(25955649-25955689)
chr2 (16-55)||(37201787-37201826)
chr2 (7-53)||(18780254-18780300)
chr2 (7-57)||(31550412-31550462)
chr2 (5-55)||(42644860-42644910)
chr2 (9-54)||(3039113-3039158)
chr2 (8-53)||(10165287-10165332)
chr2 (20-53)||(31550079-31550112)
chr2 (3-56)||(44137290-44137343)
chr2 (7-51)||(8991124-8991168)
chr2 (17-53)||(14008147-14008183)
chr2 (7-51)||(16625944-16625988)
chr2 (19-55)||(18826047-18826083)
chr2 (17-53)||(21625996-21626032)
[»] chr7 (9 HSPs)
chr7 (7-57)||(3658674-3658724)
chr7 (7-56)||(7667328-7667377)
chr7 (8-53)||(38236010-38236055)
chr7 (7-55)||(42854118-42854166)
chr7 (5-55)||(20513524-20513574)
chr7 (17-55)||(34651869-34651907)
chr7 (16-53)||(7666982-7667019)
chr7 (16-53)||(44690089-44690126)
chr7 (7-55)||(36747166-36747214)
[»] chr3 (16 HSPs)
chr3 (1-51)||(47434114-47434164)
chr3 (11-56)||(30132052-30132097)
chr3 (17-57)||(3537433-3537473)
chr3 (16-56)||(39499424-39499464)
chr3 (16-56)||(47789261-47789301)
chr3 (9-56)||(2420534-2420581)
chr3 (16-55)||(38456485-38456524)
chr3 (11-58)||(38515458-38515505)
chr3 (16-54)||(55439811-55439849)
chr3 (11-56)||(2927730-2927775)
chr3 (7-48)||(18257835-18257876)
chr3 (16-53)||(44411972-44412009)
chr3 (16-53)||(47789618-47789655)
chr3 (16-53)||(49861062-49861099)
chr3 (16-56)||(32859065-32859105)
chr3 (16-52)||(55445135-55445171)
[»] chr6 (5 HSPs)
chr6 (16-57)||(29241647-29241688)
chr6 (9-56)||(2365762-2365809)
chr6 (7-53)||(26713735-26713781)
chr6 (19-55)||(24734757-24734793)
chr6 (10-58)||(31345182-31345230)
[»] scaffold0028 (1 HSPs)
scaffold0028 (16-56)||(35270-35310)
[»] chr5 (9 HSPs)
chr5 (16-56)||(10295712-10295752)
chr5 (16-56)||(25598584-25598624)
chr5 (16-56)||(38120010-38120050)
chr5 (7-53)||(35700932-35700978)
chr5 (11-56)||(1935231-1935276)
chr5 (19-56)||(17093126-17093163)
chr5 (6-55)||(32824533-32824582)
chr5 (1-53)||(1658387-1658439)
chr5 (17-57)||(9684605-9684645)
[»] scaffold0717 (1 HSPs)
scaffold0717 (16-56)||(1805-1845)
[»] scaffold0006 (1 HSPs)
scaffold0006 (17-57)||(59668-59708)


Alignment Details
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 9595776 - 9595829
Alignment:
Q  5 cctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaagtt 58  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||    
T  9595776 cctccaaaaccctcccctcccttcccctccaaactcccaaacaaagccttagtt 9595829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 39179269 - 39179315
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||||| ||||||||| |||||||||||| |||||||||||||||    
T  39179269 tccaaaaccctcccctcccttcccctccaaactcccaaacaaagcct 39179315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 33991768 - 33991809
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  33991768 ctcccctcccttcccctccaaactcccaaacaaagcctaagt 33991809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 1523813 - 1523861
Alignment:
Q  8 ccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||| ||||| ||| |||||||||||| ||||||||||||||||||    
T  1523813 ccaaaactctcccatccattcccctccaaactcccaaacaaagcctaag 1523861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 15464029 - 15464077
Alignment:
Q  8 ccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||| ||||||||| ||||||| |||| ||||||||||||||||||    
T  15464029 ccaaaaccctcccctcccttccccttcaaactcccaaacaaagcctaag 15464077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 50247814 - 50247862
Alignment:
Q  8 ccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||| ||||||||| |||||||||||| ||||||| ||||||||||    
T  50247814 ccaaaaccctcccctcccttcccctccaaactcccaaagaaagcctaag 50247862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 896367 - 896312
Alignment:
Q  1 ccaacctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||| ||||| | ||||||||| ||| |||||||| ||||||||||||||||||    
T  896367 ccaacccccaaagccctcccctcccttctcctccaaactcccaaacaaagcctaag 896312  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 26940524 - 26940478
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||||| |||||||||| ||||||||||| || ||||||||||||    
T  26940524 tccaaaaccctcccctcctctcccctccaaactctcaaacaaagcct 26940478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 28718955 - 28719005
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    |||||||| |||| ||||||||||||||||| || ||||||||| ||||||    
T  28718955 tccaaaaccctccactcctttcccctccaaactcgcaaacaaagtctaagt 28719005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 43571823 - 43571781
Alignment:
Q  17 tcccctcctttcccctccaaattcccaaacaaagcctaagttg 59  Q
    |||||||| |||| ||||||| |||||||||||||||||||||    
T  43571823 tcccctcccttcctctccaaactcccaaacaaagcctaagttg 43571781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 11017819 - 11017860
Alignment:
Q  8 ccaaaacactcccctcctttcccctccaaattcccaaacaaa 49  Q
    ||||||| ||||||||||||||||| | ||||||||||||||    
T  11017819 ccaaaaccctcccctcctttcccctacgaattcccaaacaaa 11017860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 32299329 - 32299366
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  32299329 ctcccctcccttcccctccaaactcccaaacaaagcct 32299366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 32300281 - 32300318
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  32300281 ctcccctcccttcccctccaaactcccaaacaaagcct 32300318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 38795191 - 38795228
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  38795191 ctcccctcccttcccctccaaactcccaaacaaagcct 38795228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42161924 - 42161871
Alignment:
Q  1 ccaacctccaaaacactcccctcctttcccctccaaattcccaaacaaagccta 54  Q
    |||||| ||||| | ||||||||  |||||||||||| ||||||||||||||||    
T  42161924 ccaacccccaaagccctcccctctcttcccctccaaactcccaaacaaagccta 42161871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 27499900 - 27499852
Alignment:
Q  9 caaaacactcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    |||||| |||||||||  |||||| |||| |||||||||||||||||||    
T  27499900 caaaaccctcccctcccctccccttcaaactcccaaacaaagcctaagt 27499852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 45565348 - 45565392
Alignment:
Q  9 caaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||| ||||||||| |||||||||||| || ||||||||||||    
T  45565348 caaaaccctcccctcccttcccctccaaactcgcaaacaaagcct 45565392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 50476743 - 50476791
Alignment:
Q  5 cctccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||||||| |||||  || |||||||||||| |||||||||||||||    
T  50476743 cctccaaaaccctccctacccttcccctccaaactcccaaacaaagcct 50476791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34148450 - 34148398
Alignment:
Q  1 ccaacctccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||| ||||||| ||||||||| |||||||||||| |||||||||||||||    
T  34148450 ccaacccccaaaaccctcccctcccttcccctccaaactcccaaacaaagcct 34148398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 1941905 - 1941866
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  1941905 ctcccctcccttcccctccaaactcccaaacaaagcctaa 1941866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 3404736 - 3404782
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||||| |||||||||  ||||||||||| |||||||||||||||    
T  3404736 tccaaaaccctcccctcccctcccctccaaactcccaaacaaagcct 3404782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 34272432 - 34272383
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||||  ||||||||| ||||||| |||| ||||||||||||||||||    
T  34272432 tccaaaatcctcccctcccttccccttcaaactcccaaacaaagcctaag 34272383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 36906415 - 36906452
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  36906415 ctcccctcccttcccctccaaactcccaaacaaagcct 36906452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 37659388 - 37659351
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  37659388 ctcccctcccttcccctccaaattctcaaacaaagcct 37659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 1942197 - 1942241
Alignment:
Q  9 caaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||| ||||||||| |||||||||||| ||| |||||||||||    
T  1942197 caaaaccctcccctcccttcccctccaaactcctaaacaaagcct 1942241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 37659694 - 37659742
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||||| ||||||||| ||||||| |||| ||||||||||| |||||    
T  37659694 tccaaaaccctcccctcccttccccttcaaactcccaaacaaaacctaa 37659742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 22845098 - 22845046
Alignment:
Q  5 cctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    |||||||| | ||||||||| |||||||||||| |||||||||||||||||||    
T  22845098 cctccaaagccctcccctcccttcccctccaaactcccaaacaaagcctaagt 22845046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20534138 - 20534193
Alignment:
Q  1 ccaacctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||| ||||| | ||||||||| |||||||||||| ||||||||||||||||||    
T  20534138 ccaacccccaaagccctcccctcccttcccctccaaactcccaaacaaagcctaag 20534193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 7182354 - 7182404
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    |||||||| |||||||||  ||||||||||| |||||||||||||||||||    
T  7182354 tccaaaaccctcccctcccctcccctccaaactcccaaacaaagcctaagt 7182404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 54806393 - 54806344
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||||| ||||||||| |||| ||||||| ||||||||||||||||||    
T  54806393 tccaaaaccctcccctcccttcctctccaaactcccaaacaaagcctaag 54806344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 21358028 - 21357977
Alignment:
Q  5 cctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||||||| ||||||||| |||||||||||| || |||||| ||||||||    
T  21358028 cctccaaaaccctcccctcccttcccctccaaactctcaaacagagcctaag 21357977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 31340705 - 31340658
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagccta 54  Q
    |||||||| ||||| ||| |||||||||||| ||||||||||||||||    
T  31340705 tccaaaaccctcccatcccttcccctccaaactcccaaacaaagccta 31340658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 41844661 - 41844700
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  41844661 ctcccctcccttcccctccaaactcccaaacaaagcctaa 41844700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38366237 - 38366291
Alignment:
Q  1 ccaacctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||| ||||| | ||||||||| |||| ||||||| |||||||||||||||||    
T  38366237 ccaacccccaaagccctcccctcccttcctctccaaactcccaaacaaagcctaa 38366291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 32648867 - 32648822
Alignment:
Q  8 ccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||| ||||||||| ||||||||||||  ||||||||||||||    
T  32648867 ccaaaaccctcccctcccttcccctccaaacccccaaacaaagcct 32648822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 41363995 - 41364027
Alignment:
Q  27 tcccctccaaattcccaaacaaagcctaagttg 59  Q
    ||||||||||| |||||||||||||||||||||    
T  41363995 tcccctccaaactcccaaacaaagcctaagttg 41364027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 45899511 - 45899547
Alignment:
Q  19 ccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||| |||||||||||| |||||||||||||||||    
T  45899511 ccctcccttcccctccaaactcccaaacaaagcctaa 45899547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 50641975 - 50641927
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||||| |||||||||  ||| ||||||| |||||||||||||||||    
T  50641975 tccaaaactctcccctcccctcctctccaaactcccaaacaaagcctaa 50641927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 40357669 - 40357724
Alignment:
Q  2 caacctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    ||||| ||||||| ||||||||| |||||||||||| | |||||||||||||||||    
T  40357669 caacccccaaaactctcccctcccttcccctccaaacttccaaacaaagcctaagt 40357724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 13765791 - 13765749
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaagtt 58  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  13765791 ctcccctcctttctcctccaaactcccaaacaaagcctaagtt 13765749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 14008491 - 14008540
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||||| ||||||||| |||||||||||| ||||||| ||||||||||    
T  14008491 tccaaaaccctcccctcccttcccctccaaactcccaaagaaagcctaag 14008540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 3120013 - 3120061
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||||| |||||||||| ||||||||||| || ||||||||||||||    
T  3120013 tccaaaaccctcccctcctctcccctccaaaatctcaaacaaagcctaa 3120061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 25955689 - 25955649
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  25955689 ctccccttctttcccctccaaactcccaaacaaagcctaag 25955649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 37201787 - 37201826
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  37201787 ctcccctcccttcccctccaaattcgcaaacaaagcctaa 37201826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 18780300 - 18780254
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||||| |||||||||  ||||||||||| |||||||||||||||    
T  18780300 tccaaaaccctcccctcccctcccctccaaactcccaaacaaagcct 18780254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 31550412 - 31550462
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    |||||||| |||||||||  ||| ||||||| |||||||||||||||||||    
T  31550412 tccaaaaccctcccctcccctccactccaaactcccaaacaaagcctaagt 31550462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 42644860 - 42644910
Alignment:
Q  5 cctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||||||| ||| ||||| |||||||||||| ||||||||| |||||||    
T  42644860 cctccaaaaccctctcctcccttcccctccaaactcccaaacagagcctaa 42644910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 3039113 - 3039158
Alignment:
Q  9 caaaacactcccctcctttcccctccaaattcccaaacaaagccta 54  Q
    |||||| ||| |||||| ||||||||||| ||||||||||||||||    
T  3039113 caaaaccctctcctcctctcccctccaaactcccaaacaaagccta 3039158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 10165332 - 10165287
Alignment:
Q  8 ccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||| ||||| |||| ||||||||||| |||||||||||||||    
T  10165332 ccaaaactctcccttcctctcccctccaaactcccaaacaaagcct 10165287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 31550112 - 31550079
Alignment:
Q  20 cctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||| ||||||||||||||||||||||||||||    
T  31550112 cctcccttcccctccaaattcccaaacaaagcct 31550079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 44137290 - 44137343
Alignment:
Q  3 aacctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||| ||||| | ||||| ||| |||||||||||| ||||||||||||||||||    
T  44137290 aacccccaaagccctcccttcccttcccctccaaactcccaaacaaagcctaag 44137343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 8991124 - 8991168
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagc 51  Q
    |||||||| |||||||||  ||||||||||| |||||||||||||    
T  8991124 tccaaaaccctcccctcccctcccctccaaactcccaaacaaagc 8991168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 14008183 - 14008147
Alignment:
Q  17 tcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||||| |||||||||||| |||||||||||||||    
T  14008183 tcccctcccttcccctccaaactcccaaacaaagcct 14008147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 16625944 - 16625988
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagc 51  Q
    |||||||| ||||||||| |||||||||||| || ||||||||||    
T  16625944 tccaaaaccctcccctcccttcccctccaaactcgcaaacaaagc 16625988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 18826083 - 18826047
Alignment:
Q  19 ccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||| |||||||||||| |||||||||||||||||    
T  18826083 ccctcccttcccctccaaactcccaaacaaagcctaa 18826047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 21626032 - 21625996
Alignment:
Q  17 tcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  21626032 tcccctccattcccctccaaattcgcaaacaaagcct 21625996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 3658674 - 3658724
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    |||||||| |||||||||  ||||||||||| |||||||||||||||||||    
T  3658674 tccaaaaccctcccctcccctcccctccaaactcccaaacaaagcctaagt 3658724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 7667328 - 7667377
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||||| |||||||||  ||||||||||| ||||||||||||||||||    
T  7667328 tccaaaaccctcccctcccctcccctccaaactcccaaacaaagcctaag 7667377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 38236010 - 38236055
Alignment:
Q  8 ccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||    
T  38236010 ccaaaactctcccctcccttcccctccaaactcccaaacaaagcct 38236055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 42854166 - 42854118
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||| | ||||||||| ||||||||||||||| ||||||||||||||    
T  42854166 tccaaagccctcccctcccttcccctccaaattcacaaacaaagcctaa 42854118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 20513524 - 20513574
Alignment:
Q  5 cctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||||||| ||||||||| ||||||| ||||  ||||||||||||||||    
T  20513524 cctccaaaaccctcccctcccttcccctacaaacacccaaacaaagcctaa 20513574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 34651907 - 34651869
Alignment:
Q  17 tcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  34651907 tcccctcccttcccctccaaactcccaaacaaagcctaa 34651869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 7667019 - 7666982
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  7667019 ctcccctcccttcccctccaaactcccaaacaaagcct 7666982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 44690089 - 44690126
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  44690089 ctcccctcccttcccctccaaattcccaaacagagcct 44690126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 36747214 - 36747166
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||||| |||||||||  ||||||||||| || ||||||||||||||    
T  36747214 tccaaaaccctcccctcccctcccctccaaactctcaaacaaagcctaa 36747166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47434164 - 47434114
Alignment:
Q  1 ccaacctccaaaacactcccctcctttcccctccaaattcccaaacaaagc 51  Q
    |||||||||||||| ||||||||  |||||||||||| |||||||||||||    
T  47434164 ccaacctccaaaaccctcccctctcttcccctccaaactcccaaacaaagc 47434114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 30132052 - 30132097
Alignment:
Q  11 aaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||| |||||||||  ||||||||||||||||||||||||||||||    
T  30132052 aaaccctcccctcccctcccctccaaattcccaaacaaagcctaag 30132097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 3537433 - 3537473
Alignment:
Q  17 tcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  3537433 tcccctcccttcccctccaaactcccaaacaaagcctaagt 3537473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 39499424 - 39499464
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  39499424 ctcccctcccttcccctccaaactcccaaacaaagcctaag 39499464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 47789301 - 47789261
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  47789301 ctcccctcccttcccctccaaactcccaaacaaagcctaag 47789261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 2420581 - 2420534
Alignment:
Q  9 caaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||| ||||||||| |||||||| ||| ||||||||||||||||||    
T  2420581 caaaaccctcccctccattcccctctaaactcccaaacaaagcctaag 2420534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 38456524 - 38456485
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  38456524 ctcccctcccttcccctccaaactcccaaacaaagcctaa 38456485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 38515458 - 38515505
Alignment:
Q  11 aaacactcccctcctttcccctccaaattcccaaacaaagcctaagtt 58  Q
    |||| ||||||||| |||||||||||||| ||||||||||||| ||||    
T  38515458 aaaccctcccctcccttcccctccaaatttccaaacaaagccttagtt 38515505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 55439811 - 55439849
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagccta 54  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  55439811 ctcccctcccttcccctccaaactcccaaacaaagccta 55439849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 2927775 - 2927730
Alignment:
Q  11 aaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||||||||||| ||||||| |||| || |||||||||||||||    
T  2927775 aaacactcccctcccttcccctgcaaactcgcaaacaaagcctaag 2927730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 18257835 - 18257876
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaa 48  Q
    |||||||| |||||||||||||||||||||| || |||||||    
T  18257835 tccaaaactctcccctcctttcccctccaaactcgcaaacaa 18257876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 44412009 - 44411972
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  44412009 ctcccctcccttcccctccaaactcccaaacaaagcct 44411972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 47789618 - 47789655
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  47789618 ctcccctcccttcccctccaaactcccaaacaaagcct 47789655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 49861062 - 49861099
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  49861062 ctcccctcccttcccctccaaactcccaaacaaagcct 49861099  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 32859065 - 32859105
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||||||  ||||||||||| ||||||||||||||||||    
T  32859065 ctcccctcccctcccctccaaactcccaaacaaagcctaag 32859105  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 55445135 - 55445171
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcc 52  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  55445135 ctcccctcccttcccctccaaactcccaaacaaagcc 55445171  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 29241688 - 29241647
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  29241688 ctcccctcccttcccctccaaactcccaaacaaagcctaagt 29241647  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 2365762 - 2365809
Alignment:
Q  9 caaaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||| |||||||||  ||||||||||| ||||||||||||||||||    
T  2365762 caaaaccctcccctcccctcccctccaaactcccaaacaaagcctaag 2365809  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 26713781 - 26713735
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||||| ||||||||| |||||||||||| || ||||||||||||    
T  26713781 tccaaaaccctcccctcccttcccctccaaactcgcaaacaaagcct 26713735  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 24734793 - 24734757
Alignment:
Q  19 ccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    |||||| |||||||||||| |||||||||||||||||    
T  24734793 ccctcccttcccctccaaactcccaaacaaagcctaa 24734757  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 31345230 - 31345182
Alignment:
Q  10 aaaacactcccctcctttcccctccaaattcccaaacaaagcctaagtt 58  Q
    ||||| ||||||||| ||||| |||||| ||||||||||||||| ||||    
T  31345230 aaaaccctcccctccgttcccttccaaactcccaaacaaagccttagtt 31345182  T

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Target: scaffold0028 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 35310 - 35270
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  35310 ctcccctcccttcccctccaaactcccaaacaaagcctaag 35270  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 10295712 - 10295752
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  10295712 ctcccctcccttcccctccaaactcccaaacaaagcctaag 10295752  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 25598624 - 25598584
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  25598624 ctcccctcccttcccctccaaactcccaaacaaagcctaag 25598584  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 38120050 - 38120010
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  38120050 ctcccctcccttcccctccaaactcccaaacaaagcctaag 38120010  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 35700978 - 35700932
Alignment:
Q  7 tccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||||| |||||||||  ||||||||||| |||||||||||||||    
T  35700978 tccaaaaccctcccctcccctcccctccaaactcccaaacaaagcct 35700932  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 1935231 - 1935276
Alignment:
Q  11 aaacactcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||| ||||||||| |||||||||||| || |||||||||||||||    
T  1935231 aaactctcccctcccttcccctccaaactcgcaaacaaagcctaag 1935276  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 17093126 - 17093163
Alignment:
Q  19 ccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  17093126 ccctcccttcccctccaaactcccaaacaaagcctaag 17093163  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 32824582 - 32824533
Alignment:
Q  6 ctccaaaacactcccctcctttcccctccaaattcccaaacaaagcctaa 55  Q
    ||||||| ||||||||||| ||| |||||||| || ||||||||||||||    
T  32824582 ctccaaagcactcccctcccttctcctccaaactcgcaaacaaagcctaa 32824533  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1658387 - 1658439
Alignment:
Q  1 ccaacctccaaaacactcccctcctttcccctccaaattcccaaacaaagcct 53  Q
    |||||| ||||||| ||||||||| ||||||| |||| || ||||||||||||    
T  1658387 ccaacccccaaaaccctcccctcccttccccttcaaactctcaaacaaagcct 1658439  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 9684645 - 9684605
Alignment:
Q  17 tcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    |||| ||| |||||||||||| |||||||||||||||||||    
T  9684645 tcccttcccttcccctccaaactcccaaacaaagcctaagt 9684605  T

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Target: scaffold0717 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 1805 - 1845
Alignment:
Q  16 ctcccctcctttcccctccaaattcccaaacaaagcctaag 56  Q
    ||||||||| |||||||||||| || |||||||||||||||    
T  1805 ctcccctcccttcccctccaaactctcaaacaaagcctaag 1845  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 59708 - 59668
Alignment:
Q  17 tcccctcctttcccctccaaattcccaaacaaagcctaagt 57  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  59708 tcccctcccctcccctccaaactcccaaacaaagcctaagt 59668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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