View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_high_47 (Length: 242)
Name: NF9893_high_47
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 34315678 - 34315447
Alignment:
| Q |
1 |
catgaaagctgtggttgcacgaattctatgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaaca |
100 |
Q |
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| T |
34315678 |
catgaaagctgtggttgcacgaattctatgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgtaca |
34315579 |
T |
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| Q |
101 |
gactctacagtgtattgttcttgattatctatgaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatccca |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34315578 |
gactctacagtgtattgttcttgattatctattaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatccca |
34315479 |
T |
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| Q |
201 |
aagatttagcacaatgcttctgttctcctatg |
232 |
Q |
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| T |
34315478 |
aagatttagcacaatgcttctgttctcctatg |
34315447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 34251269 - 34251060
Alignment:
| Q |
5 |
aaagctgtggttgcacgaattctatgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagact |
104 |
Q |
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| T |
34251269 |
aaagctgttgttccatgaatttcatgacaataaaatacaaccttttgaaagttcaacctatgacacatcactgctttctctccaagattttgaactgact |
34251170 |
T |
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| Q |
105 |
ctacagtgtattgttcttgattatctatgaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaaga |
204 |
Q |
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| T |
34251169 |
ctattttgtattgttcatgtttatcaatgaaggaacttgaaagtgcttgaatattttttccaagcttagaaattgaaaatccgattaatgttcctaagga |
34251070 |
T |
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| Q |
205 |
tttagcacaa |
214 |
Q |
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||| |||||| |
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| T |
34251069 |
ttttgcacaa |
34251060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 34241484 - 34241298
Alignment:
| Q |
28 |
atgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagactctacagtgtattgttcttgatta |
127 |
Q |
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| T |
34241484 |
atgacaataaaatacaactttttgaaagttcaacctatgacacatcactgctttgtctccaagattttgcaccgattctattttgtattgttcatgttta |
34241385 |
T |
|
| Q |
128 |
tctatgaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaa |
214 |
Q |
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| T |
34241384 |
tcaatgaaggaacttgaaagtgattgaatattttttccaagttttgaaattgcaaatccaattaatgttcctaaggattttgcacaa |
34241298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 17004298 - 17004238
Alignment:
| Q |
29 |
tgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaa |
89 |
Q |
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||||||||| ||||||| |||| |||||| || || |||||||||||| |||| ||||||| |
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| T |
17004298 |
tgacaataaaatacaacatttttgaaatttaatctatgacacatcaccactttgtctccaa |
17004238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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