View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_high_54 (Length: 229)

Name: NF9893_high_54
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_high_54
NF9893_high_54
[»] chr8 (4 HSPs)
chr8 (5-204)||(32160760-32160957)
chr8 (1-211)||(24556261-24556469)
chr8 (2-216)||(45485553-45485766)
chr8 (87-204)||(2149011-2149128)
[»] chr7 (5 HSPs)
chr7 (1-204)||(33941001-33941202)
chr7 (2-216)||(43265292-43265505)
chr7 (90-181)||(26050565-26050656)
chr7 (90-181)||(26059924-26060015)
chr7 (90-195)||(7899616-7899721)
[»] chr3 (3 HSPs)
chr3 (1-216)||(36476010-36476220)
chr3 (2-216)||(26903692-26903905)
chr3 (2-216)||(36617135-36617348)
[»] chr4 (4 HSPs)
chr4 (89-212)||(8153475-8153589)
chr4 (90-216)||(27298812-27298939)
chr4 (2-216)||(2159122-2159334)
chr4 (96-204)||(49078035-49078143)
[»] chr1 (8 HSPs)
chr1 (45-212)||(34912894-34913062)
chr1 (90-216)||(9516502-9516629)
chr1 (90-216)||(35438636-35438763)
chr1 (90-204)||(43909133-43909247)
chr1 (2-216)||(1016363-1016576)
chr1 (143-204)||(280952-281013)
chr1 (4-72)||(9478169-9478235)
chr1 (90-204)||(13241700-13241806)
[»] chr2 (2 HSPs)
chr2 (56-204)||(2631882-2632030)
chr2 (2-202)||(4076108-4076306)
[»] chr6 (2 HSPs)
chr6 (2-216)||(18817454-18817667)
chr6 (2-216)||(24902223-24902436)
[»] chr5 (1 HSPs)
chr5 (2-216)||(17075971-17076184)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 32160957 - 32160760
Alignment:
Q  5 aaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgcata 104  Q
    |||||||||| |||||||||||||||  | |||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  32160957 aaatctaaaatactaaacaaacaatc--attcttataacgatgcaagttagaaacactagaagttgaagagtgttgtctaagtttcttcctttgcgcata 32160860  T
Q  105 cggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgtaat 204  Q
     | |||||||||| || ||||||| |||||||  |||||| ||||||||||||||||| ||||||||| |||  |||| ||||||||||||| |||||||    
T  32160859 tgttgcatccataccaggcacatctatatcatgcttattgcaaattttaataactttagatataagtttttcttatccctcattcctcatttattgtaat 32160760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 24556469 - 24556261
Alignment:
Q  1 ctgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcg 100  Q
    ||||||||| |||||| ||| |||||||||  |||||||| ||||||||| |||||||||||||||||||||| |||||| |||  ||||||| | | ||    
T  24556469 ctgcaaatcaaaaacaataatcaaacaatc--actcttatgatgatgcaaattagaaacactagaagttgaagagtgttgcctaggtttcttcctattcg 24556372  T
Q  101 catacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttg 200  Q
    |||||||||||||||||||  |||||||||||||||  |||||| ||||||||||||| |||  |||||  |||| ||| || |||||||||||||||||    
T  24556371 catacggtgcatccatatccggcacatcaatatcatccttattgcaaattttaataaccttaggtataaaatctttccacccctcattcctcatttcttg 24556272  T
Q  201 taatgtttttt 211  Q
    |||| ||||||    
T  24556271 taatatttttt 24556261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 45485766 - 45485553
Alignment:
Q  2 tgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgc 101  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||||   | ||||  |   |||  ||||||   || |      
T  45485766 tgcaaatctaaaacactaaacaaacaatc--attcttataatgatgcaaattagaaacactagaaaccggagggactcacctaggtttctttccttccat 45485669  T
Q  102 atacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgt 201  Q
    ||| ||||||||||||||| | |||||||| |||| |||| || ||||| | | |||  || |||||||||||||||| || ||||||||||||||||||    
T  45485668 atatggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttcccacccctcattcctcatttcttgt 45485569  T
Q  202 aa-tgttttttggtat 216  Q
    || |||||||||||||    
T  45485568 aattgttttttggtat 45485553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 2149011 - 2149128
Alignment:
Q  87 tttcttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatca 186  Q
    |||||||  |||| |||| | |||||||||| || ||| |||||||||||  |||||| |||||| || |||  || |||||||||||||||  || |||    
T  2149011 tttcttcccttgcacatatgatgcatccataacaggcatatcaatatcatgcttattgcaaatttcaacaaccctaaatataagttcttccctcccctca 2149110  T
Q  187 ttcctcatttcttgtaat 204  Q
    ||||||||||||||||||    
T  2149111 ttcctcatttcttgtaat 2149128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 33941202 - 33941001
Alignment:
Q  1 ctgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcg 100  Q
    ||||||||||||||||||||||||||||||  | ||||| | |||||||| |||||||||| |||||||||||   ||||||||  ||||||| ||||||    
T  33941202 ctgcaaatctaaaacactaaacaaacaatc--attcttaaagtgatgcaaattagaaacacaagaagttgaagaaagttgtctagctttcttcctttgcg 33941105  T
Q  101 catacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttg 200  Q
    |||| ||||||||||||||| ||| |||||||||||  |||||| ||||||||||||| ||| |||||||||||||||| || ||||||||||| | |||    
T  33941104 catatggtgcatccatatcaggcagatcaatatcatgcttattgcaaattttaataaccttagatataagttcttcccacccctcattcctcatatattg 33941005  T
Q  201 taat 204  Q
    ||||    
T  33941004 taat 33941001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 43265505 - 43265292
Alignment:
Q  2 tgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgc 101  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||||   | ||||  | | |||  ||||||   || |      
T  43265505 tgcaaatctaaaacactaaacaaacaatc--attcttataatgatgcaaattagaaacactagaaaccggagggactcgcctaggtttctttccttccat 43265408  T
Q  102 atacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgt 201  Q
    ||| ||||||||||||||| | |||||||| |||| |||| || ||||| | | |||  || |||||||||||||||| || ||||||||||||||||||    
T  43265407 atatggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttcccacccctcattcctcatttcttgt 43265308  T
Q  202 aa-tgttttttggtat 216  Q
    || |||||||||||||    
T  43265307 aattgttttttggtat 43265292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 26050565 - 26050656
Alignment:
Q  90 cttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatc 181  Q
    |||| ||||||||||  |||||||||||||| |||||||||||||||  |||||| ||||||||||||||||| ||||||||||||| ||||    
T  26050565 cttcctttgcgcatatagtgcatccatatcacgcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttctcatc 26050656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 26059924 - 26060015
Alignment:
Q  90 cttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatc 181  Q
    |||| ||||||||||  |||||||||||||| |||||||||||||||  |||||| ||||||||||||||||| ||||||||||||| ||||    
T  26059924 cttcctttgcgcatatagtgcatccatatcacgcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttctcatc 26060015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 7899616 - 7899721
Alignment:
Q  90 cttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattc 189  Q
    |||| ||| ||||||||| ||||| |||||| |||||||||||||||  |||||| || |||||||||||||| || |||||||||||||||| |||| |    
T  7899616 cttccttttcgcatacggcgcatctatatcaggcacatcaatatcatgcttattgcaatttttaataactttagatgtaagttcttcccatccctcatcc 7899715  T
Q  190 ctcatt 195  Q
    ||||||    
T  7899716 ctcatt 7899721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 36476010 - 36476220
Alignment:
Q  1 ctgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcg 100  Q
    |||||||||||||||||||||||||||||   | ||||| | |||| ||| ||| |||||||||||||||||  |||||| |||| ||||||| ||| ||    
T  36476010 ctgcaaatctaaaacactaaacaaacaatt--attcttaaagtgattcaaattaaaaacactagaagttgaaaagtgttgcctaactttcttcctttacg 36476107  T
Q  101 catacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttg 200  Q
    |||| |||||||    ||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||    
T  36476108 catatggtgcat----atcaaacacatcaatatcatgtttattgtaaattttaataaccttagatataagttcttcccacccttcattcctcatttcttg 36476203  T
Q  201 taa-tgttttttggtat 216  Q
    ||| | |||||||||||    
T  36476204 taattattttttggtat 36476220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 26903692 - 26903905
Alignment:
Q  2 tgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgc 101  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||||   | ||||  | | |||  ||||||   || |      
T  26903692 tgcaaatctaaaacactaaacaaacaatc--attcttataatgatgcaaattagaaacactagaaaccggagggactcgcctaggtttctttccttccat 26903789  T
Q  102 atacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgt 201  Q
    ||| ||||||||||||||| | |||||||| |||| |||| || ||||| | | |||  || |||||||||||||||| || ||||||||||||||||||    
T  26903790 atatggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttcccacccctcattcctcatttcttgt 26903889  T
Q  202 aa-tgttttttggtat 216  Q
    || |||||||||||||    
T  26903890 aattgttttttggtat 26903905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 36617348 - 36617135
Alignment:
Q  2 tgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgc 101  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||||   | ||||  | | |||  ||||||   || |      
T  36617348 tgcaaatctaaaacactaaacaaacaatc--attcttataatgatgcaaattagaaacactagaaacaggagggactcgcctaggtttctttccttccat 36617251  T
Q  102 atacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgt 201  Q
    ||| ||||||||||||||| | |||||||| |||| |||| || ||||| | | |||  || |||||||||||||||| || ||||||||||||||||||    
T  36617250 atatggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttcccacccctcattcctcatttcttgt 36617151  T
Q  202 aa-tgttttttggtat 216  Q
    || |||||||||||||    
T  36617150 aattgttttttggtat 36617135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 8153475 - 8153589
Alignment:
Q  89 tcttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcatt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  8153475 tcttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttccca--------- 8153565  T
Q  189 cctcatttcttgtaatgttttttg 212  Q
    ||||||||||||||||||||||||    
T  8153566 cctcatttcttgtaatgttttttg 8153589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 27298939 - 27298812
Alignment:
Q  90 cttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattc 189  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||  |||||| ||||||||||||||||| ||||||||||||| ||| | ||||||    
T  27298939 cttcctttgcgcatacggtgcatccatatcagacacatcaatatcatgcttattgcaaattttaataactttagatataagttcttctcattcttcattc 27298840  T
Q  190 ctcatttcttgtaa-tgttttttggtat 216  Q
    |||||||||| ||| | |||||||||||    
T  27298839 ctcatttcttataattattttttggtat 27298812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 2159122 - 2159334
Alignment:
Q  2 tgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgc 101  Q
    |||||| ||||||||| ||||||||||||  | ||||| | |||||||| |||||||||||| |||||||||   ||||||||  |||| || |||| |     
T  2159122 tgcaaacctaaaacaccaaacaaacaatc--attcttaaactgatgcaaattagaaacactaaaagttgaagaaagttgtctagctttcatcctttgtga 2159219  T
Q  102 atacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgt 201  Q
    ||| | ||||||||||||  ||| |||||||| ||  |||||| ||||||||||||  ||| |||||| ||||||||| || ||||||||||| ||||||    
T  2159220 atatg-tgcatccatatctggcagatcaatattatgcttattgcaaattttaataatcttagatataaattcttcccacccctcattcctcatatcttgt 2159318  T
Q  202 aa-tgttttttggtat 216  Q
    || |||||||||||||    
T  2159319 aattgttttttggtat 2159334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 49078143 - 49078035
Alignment:
Q  96 ttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatt 195  Q
    |||| |||| |||||||||| | ||||||||||||||||||  |||||| ||||||| ||||||||| |||||||||||||||  ||| ||||||| |||    
T  49078143 ttgcacatatggtgcatccaaaccaagcacatcaatatcatgcttattgcaaatttttataactttagatataagttcttccctcccaccattccttatt 49078044  T
Q  196 tcttgtaat 204  Q
    |||||||||    
T  49078043 tcttgtaat 49078035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 34912894 - 34913062
Alignment:
Q  45 atgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattg 144  Q
    |||||| ||||||| |||||||||||||| ||||||||||| ||||||| ||||| |||| || |||||||||| | |||||||||||||||  ||||||    
T  34912894 atgcaaattagaaatactagaagttgaagagtgttgtctaactttcttcctttgcacataaggcgcatccatattaggcacatcaatatcatgcttattg 34912993  T
Q  145 taaattttaataactttatatataagttcttcccatccatcattcctcatttcttgtaa-tgttttttg 212  Q
     ||||||||||||| ||||||||||||| || ||| || |||||||||||||||||||| |||||||||    
T  34912994 caaattttaataaccttatatataagttttttccacccttcattcctcatttcttgtaattgttttttg 34913062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 9516629 - 9516502
Alignment:
Q  90 cttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattc 189  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||| |||||| |||||| ||||| ||||||    
T  9516629 cttcatttgcgtatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataatttcttctcatccctcattc 9516530  T
Q  190 ctcatttcttgtaa-tgttttttggtat 216  Q
    |||||||||| ||| | |||||||||||    
T  9516529 ctcatttcttataattattttttggtat 9516502  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 35438763 - 35438636
Alignment:
Q  90 cttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattc 189  Q
    |||| |||| ||||||||||||||||||| | |||||||||||||||  |||||| ||||||||||||||||| ||||||||||||| ||||| ||||||    
T  35438763 cttcctttgggcatacggtgcatccatattaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttctcatccctcattc 35438664  T
Q  190 ctcatttcttgtaa-tgttttttggtat 216  Q
    ||||| |||| ||| | |||||||||||    
T  35438663 ctcatatcttataattattttttggtat 35438636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 43909247 - 43909133
Alignment:
Q  90 cttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattc 189  Q
    |||| ||||||||||||||||||||||||||  || || ||||||||  |||||| ||||||||||||||||| |||||||||||||||||   ||||||    
T  43909247 cttcctttgcgcatacggtgcatccatatcagacatataaatatcatgcttattgcaaattttaataactttagatataagttcttcccattgctcattc 43909148  T
Q  190 ctcatttcttgtaat 204  Q
    |||||||||| ||||    
T  43909147 ctcatttcttataat 43909133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 1016576 - 1016363
Alignment:
Q  2 tgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgc 101  Q
    |||| ||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||||   | ||||  | | |||  ||||||   || |      
T  1016576 tgcatatctaaaacactaaacaaacaatc--attcttataatgatgcaaattagaaacactagaaaccggagggactcgcctaggtttctttccttccat 1016479  T
Q  102 atacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgt 201  Q
    ||| ||||||||||||||| | |||||||| |||| |||| || ||||| | | |||  || |||||||||||||||| || ||||||||||||||||||    
T  1016478 atatggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttcccacccctcattcctcatttcttgt 1016379  T
Q  202 aa-tgttttttggtat 216  Q
    || |||||||||||||    
T  1016378 aattgttttttggtat 1016363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 281013 - 280952
Alignment:
Q  143 tgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgtaat 204  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||| ||||    
T  281013 tgtaaattttaataactttaaatataagttcttctcatccctcattccttatttcttataat 280952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 9478169 - 9478235
Alignment:
Q  4 caaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaa 72  Q
    ||||||||||||||||||||||||||  || ||||| | |||||||| |||||||||||||||||||||    
T  9478169 caaatctaaaacactaaacaaacaat--cattcttaaagtgatgcaaattagaaacactagaagttgaa 9478235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 13241806 - 13241700
Alignment:
Q  90 cttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattc 189  Q
    |||| |||||||||||  ||||| |||||||||||||||||||||||  |||||| ||        ||||||| |||||||| |||| ||| ||||||||    
T  13241806 cttcctttgcgcatacaatgcattcatatcaagcacatcaatatcatgcttattgcaa--------aactttaaatataagtccttctcattcatcattc 13241715  T
Q  190 ctcatttcttgtaat 204  Q
    |||||||||| ||||    
T  13241714 ctcatttcttataat 13241700  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 204
Target Start/End: Original strand, 2631882 - 2632030
Alignment:
Q  56 aaacactagaagttgaagggtgttgtctaattttcttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaat 155  Q
    |||||||||||||| ||| ||||||||||| ||||||| ||| |||||||||||| | ||||||||||||||||||||||||  ||||| |||||| |||    
T  2631882 aaacactagaagttaaagagtgttgtctaagtttcttcatttacgcatacggtgctttcatatcaagcacatcaatatcatacatattgcaaatttcaat 2631981  T
Q  156 aactttatatataagttcttcccatccatcattcctcatttcttgtaat 204  Q
    ||| |||||||||||||||| |||  | |||||| ||||||||||||||    
T  2631982 aaccttatatataagttctttccactcctcattcttcatttcttgtaat 2632030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 4076108 - 4076306
Alignment:
Q  2 tgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgc 101  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||| |||||||||||||||   | ||||  | | |||  ||||||   || |      
T  4076108 tgcaaatctaaaacactaaacaaacaat--cattcttataatgatgcaaattagaaacactagaaaccggagggactcgcctaggtttctttccttccat 4076205  T
Q  102 atacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgt 201  Q
    ||| ||||||||||||||| | |||||||| |||| |||| || ||||| | | |||  || ||||||| |||||||| || |||||||||||||| |||    
T  4076206 atatggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataaggtcttcccacccctcattcctcatttcctgt 4076305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 18817454 - 18817667
Alignment:
Q  2 tgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgc 101  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||||   | ||||  | | |||  ||||||   || |      
T  18817454 tgcaaatctaaaacactaaacaaacaatc--attcttataatgatgcaaattagaaacactagaaaccggagggactcgcctaggtttctttccttccat 18817551  T
Q  102 atacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgt 201  Q
    ||| ||||||||||||||| | |||||||| |||| |||| || ||||| | | |||  || |||||||||||||||| || ||||||||||||||||||    
T  18817552 atatggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttcccacccctcattcctcatttcttgt 18817651  T
Q  202 aa-tgttttttggtat 216  Q
    || |||||||||||||    
T  18817652 aattgttttttggtat 18817667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 24902223 - 24902436
Alignment:
Q  2 tgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgc 101  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||| |||||||||||||||   | ||||  | | |||  ||||||   || |      
T  24902223 tgcaaatctaaaacactaaacaaacaat--cattcttataatgatgcaaattagaaacactagaaaccggagggactcgcctaggtttctttccttccat 24902320  T
Q  102 atacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgt 201  Q
    ||| ||||||||||||||| | |||||||| |||| |||| || ||||| | | |||  || ||||||| |||||||| || ||||||||||||||||||    
T  24902321 atatggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataaggtcttcccacccctcattcctcatttcttgt 24902420  T
Q  202 aa-tgttttttggtat 216  Q
    || |||||||||||||    
T  24902421 aattgttttttggtat 24902436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 17076184 - 17075971
Alignment:
Q  2 tgcaaatctaaaacactaaacaaacaatcgcactcttataatgatgcaagttagaaacactagaagttgaagggtgttgtctaattttcttcttttgcgc 101  Q
    ||||||||||||||||||||||||||| |  | |||||||||||||||| |||||||||||||||   | || |  | | |||  ||||||   || |      
T  17076184 tgcaaatctaaaacactaaacaaacaaac--attcttataatgatgcaaattagaaacactagaaaccggagtgactcgcctaggtttctttccttccat 17076087  T
Q  102 atacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttcccatccatcattcctcatttcttgt 201  Q
    ||| || |||||||||||| | ||||||||||||| |||| || ||||||| | |||  || ||||||| |||||||| || |||||||||||||||| |    
T  17076086 atatggcgcatccatatcaggtacatcaatatcatgtttagtgcaaattttcacaaccctagatataaggtcttcccacccctcattcctcatttctttt 17075987  T
Q  202 aa-tgttttttggtat 216  Q
    || |||||||||||||    
T  17075986 aattgttttttggtat 17075971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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