View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_high_56 (Length: 223)
Name: NF9893_high_56
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_high_56 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 31444242 - 31444047
Alignment:
| Q |
18 |
gatagcttattctgcatggaaagagtcgcatgcatctccaaagcagtcgatatgcgatatgatactgttttgtgtgcaacaatgtcaacgcactaacatc |
117 |
Q |
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| T |
31444242 |
gatagcttattctgcatggaaagagtcgcatgcatctccaaagcagtcgatatgcgatatgatgctgttttgtgtgcaagaatgtcaacgcaccaacatc |
31444143 |
T |
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| Q |
118 |
atttttggcagtcatattgaatccatggactgaatttagtaaaatagaatagagagatccttttaacacataaaatggaaacacaatctgtgctcc |
213 |
Q |
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| T |
31444142 |
atttttggcagtcatattgaatccatggactgaatttagtaaaatagaatagagagatccttttaacacataaaatggaaacacaatctgttctcc |
31444047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 31457755 - 31457658
Alignment:
| Q |
111 |
taacatcatttttggcagtcatattgaatccatggactgaatttagtaaaatagaatagagagatccttttaacacataaaatggaaacacaatctgtgc |
210 |
Q |
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| T |
31457755 |
taacatcatttttggcagtcacattgaatccatggatagaatttagtaaaa-----tagagagatccttctaacacataaaatgcaaacactatctgttc |
31457661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 31448072 - 31448018
Alignment:
| Q |
111 |
taacatcatttttggcagtcatattgaatccatggactgaatttagtaaaataga |
165 |
Q |
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| T |
31448072 |
taacatcatttttggcagtcacattgaatccatggacataatttagaaaaataga |
31448018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 31448196 - 31448126
Alignment:
| Q |
18 |
gatagcttattctgcatggaaagagtcgcatgcatctccaaagcagtcgatatgcgatatgatactgtttt |
88 |
Q |
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| T |
31448196 |
gataacttattctgcatggaaagagtcgcatgcatttccaaagacattgatatgcaatatgatgctgtttt |
31448126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 31457879 - 31457837
Alignment:
| Q |
18 |
gatagcttattctgcatggaaagagtcgcatgcatctccaaag |
60 |
Q |
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| T |
31457879 |
gataacttattctgcatggaaagagtcgcatgcatttccaaag |
31457837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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