View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_high_6 (Length: 493)
Name: NF9893_high_6
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Complemental strand, 18592070 - 18591611
Alignment:
| Q |
17 |
catatcagtgttcatgtcgtatctggtgtccgtgtccgtgcttcatcgttctatttctcaaaataacaagaaggctccattattatgattttatgtatgt |
116 |
Q |
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| T |
18592070 |
catatcagtgtttatgtcgtatctcgtgtccgtgtccgtgcttcatcgttctatttctcaaaataacaagaaggctccattattatgattttatgtatgt |
18591971 |
T |
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| Q |
117 |
aaaaaagtttactaagcattaaaaatgtgtttattttccttnnnnnnnnngtgtctttatagctaaaaatgtgtgtttctctaatttnnnnnnntagagg |
216 |
Q |
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| T |
18591970 |
aaaaaagtttactaagcattaaaaatgtgtttattttccttaaaaaaaaagtgtctttatagctaaaaaggtgtgtttctctaatttaaaaaaatagagg |
18591871 |
T |
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| Q |
217 |
gatgtctaaatgcattttaaactcaacatttatacaacactcaaaagggctactttacttacatcaatgttacttttctttgcaattttgggccaatcct |
316 |
Q |
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| T |
18591870 |
gatctctaaatgcattttaaactctacatttatacaacactcaaaagggctactt-----acatcaatgttacttttctttgcaattttgggccaatcct |
18591776 |
T |
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| Q |
317 |
tggcattcacaccagttttccactcaaaatcaatagagagaacttgaggatcatgtgtttcatccccccagatacatgctaagaagtcaccactttcatg |
416 |
Q |
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| T |
18591775 |
tggcattcacaccagttttccactcaaaatcaatagagagaacttgaggatcatgtgtttcatccccccagatacatgctaagaagtcaccactttcatg |
18591676 |
T |
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| Q |
417 |
tgccacaaatgaaaactgccccgcctgaacatgctctgccaaatgatgtgaggccgtaccacctt |
481 |
Q |
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| T |
18591675 |
tgccacaaatgaaaactgccccgactgaacatgctctgccaaatgatgtgaggcagtacctcctt |
18591611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 261 - 464
Target Start/End: Complemental strand, 18586220 - 18586014
Alignment:
| Q |
261 |
aagggctactttacttacatcaatgttacttttctttgcaattttgggccaatccttggcattcacaccagttttccactcaaaatcaatagagag---a |
357 |
Q |
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| T |
18586220 |
aaggactacttaacttacatcaatgtgacttttctttgcaattttggaccaatccttggctgccacaccagttttccacacaaaatcaatagagagtgtt |
18586121 |
T |
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| Q |
358 |
acttgaggatcatgtgtttcatccccccagatacatgctaagaagtcaccactttcatgtgccacaaatgaaaactgccccgcctgaacatgctctgcca |
457 |
Q |
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| T |
18586120 |
gcttgggaatcatgtgttttatccccaaagaaacacaccaagtaatcaccactttgatgtgccacaaatgcaaactgccccgactgaacatgcgttgcta |
18586021 |
T |
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| Q |
458 |
aatgatg |
464 |
Q |
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||||||| |
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| T |
18586020 |
aatgatg |
18586014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 356
Target Start/End: Complemental strand, 18607027 - 18606944
Alignment:
| Q |
273 |
acttacatcaatgttacttttctttgcaattttgggccaatccttggcattcacaccagttttccactcaaaatcaatagagag |
356 |
Q |
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||||||||||| ||| ||||||||||||| || ||| ||| |||| || |||||||||||||||||||||||||||||| |
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| T |
18607027 |
acttacatcaacgttggttttctttgcaatactgtgccgatcaatggctgccataccagttttccactcaaaatcaatagagag |
18606944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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