View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9893_high_7 (Length: 481)
Name: NF9893_high_7
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 216 - 473
Target Start/End: Complemental strand, 8288483 - 8288229
Alignment:
| Q |
216 |
atggtaaaaactctttctgttacaccgtgacaccgtctcgcctcgggagccgttgcccacatatagagtcgttgtcaccagctccaaaacttggtgattt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
8288483 |
atggtaaaaactctttctgttacaccgtgaaaccgtctcgtctcgggagccattgcccgcatctagaattgttgtcaccagctccaaaacttggtgattt |
8288384 |
T |
|
| Q |
316 |
tgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttgaaccaaaagctttgactgtcataataatttga |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8288383 |
tgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttgaaccaaaagctttgactgtca---taatttga |
8288287 |
T |
|
| Q |
416 |
acatattttgcgagtgtacaattttgaccgtcttttgagctttagactatcctttgct |
473 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
8288286 |
acatattttgcgagtgtataattttgatcgtcttttgagctttagactatcttttgct |
8288229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 8288673 - 8288535
Alignment:
| Q |
18 |
acatagaacagcggaatggaaaataatattgagtatgaaagaattgttacatcaattaaatgagtacattaaggcttatatagccaattacaccaactaa |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8288673 |
acatagaacagcgaaatggaaaataatattgagtatgaaagaattgttacatcaattaaatgagtacattaaggcttatatagccaattagaccaactaa |
8288574 |
T |
|
| Q |
118 |
ctcctaactaatgtaactagtttttacaactcttaaata |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8288573 |
ctcctaactaatgtaactagtttttacaactctaaaata |
8288535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 19828735 - 19828618
Alignment:
| Q |
18 |
acatagaacagcggaatggaaaataatattgagtatgaaagaattgttacatcaattaaatgagtacattaaggcttatatagccaattacaccaactaa |
117 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
19828735 |
acatagaaaagcgaaatggaaaataatattgagtatgaaagaattgttacatcaatgaaatgattatattaaggcttatatagccaattagaccaactaa |
19828636 |
T |
|
| Q |
118 |
ctcctaactaatgtaact |
135 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
19828635 |
cttctaactaatgtaact |
19828618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 19828528 - 19828472
Alignment:
| Q |
279 |
tagagtcgttgtcaccagctccaaaacttggtgattttgtgaggagaccaagccaaa |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19828528 |
tagagtcgttgtcaccagctccaaaacttggtgattttgtgaggagaccaaaccaaa |
19828472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 26585309 - 26585230
Alignment:
| Q |
305 |
cttggtgattttgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttga |
384 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26585309 |
cttggtgattttgtgaggaggccaaaccaaaccaaagtttgtttgacatagattttggtgagtgattgtgtttgttttga |
26585230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 284 - 388
Target Start/End: Complemental strand, 26585684 - 26585582
Alignment:
| Q |
284 |
tcgttgtcaccagctccaaaacttggtgattttgtgaggagaccaagccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttg |
383 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
26585684 |
tcgttgtcaccaactccaaaacttggtgattttgtgaggagagaaaaccaaacaaaagtttgtttaacatggattttggtgagtga--ctgtttgttttg |
26585587 |
T |
|
| Q |
384 |
aacca |
388 |
Q |
| |
|
||||| |
|
|
| T |
26585586 |
aacca |
26585582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 26925799 - 26925900
Alignment:
| Q |
18 |
acatagaacagcggaatggaaaataatattgagtatgaaagaattgttacatcaattaaatgagtacattaaggcttatatagccaattacaccaactaa |
117 |
Q |
| |
|
|||||||| || | || ||||||||||||||| ||||| ||||||||||||| || || ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26925799 |
acatagaaaagtgaaaaggaaaataatattgattatgagagaattgttacattaacta-----gtacattaaggcttatatagccaattaaaccaactaa |
26925893 |
T |
|
| Q |
118 |
ctcctaa |
124 |
Q |
| |
|
||||||| |
|
|
| T |
26925894 |
ctcctaa |
26925900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 26979391 - 26979448
Alignment:
| Q |
331 |
ccaaaccaaagtttgtttgacatggattttggtgagtgattgtgtttgttttgaacca |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
26979391 |
ccaaaccaaagtttgtttgacatggattttggtgaatgagtgtgtttattttgaacca |
26979448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 26585886 - 26585842
Alignment:
| Q |
92 |
cttatatagccaattacaccaactaactcctaactaatgtaacta |
136 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
26585886 |
cttatatagccagttagaccaactaactcctaactaatttaacta |
26585842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University