View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_1 (Length: 629)
Name: NF9893_low_1
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 12 - 614
Target Start/End: Complemental strand, 28595930 - 28595322
Alignment:
| Q |
12 |
agcataggtttacaaattagtcatatacacaaatataaagatttgcatgtttgnnnnnnn---tgggttagtgatgaacttaccagataaagtcaccata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
28595930 |
agcataggtttacaaattagtcatatacacaaatataaagatttccatgttttgaaaaaaaaatgggttagtgatgaacttaccagataaagtaaccata |
28595831 |
T |
|
| Q |
109 |
tctttgagagtaagacctttattggtaaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaactttt-actagca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28595830 |
tctttgagagtaagacctttattggtaaaatgggatattagagttgttagatcatctgtaaattttggaaggtctgaattggccaaactttttactagca |
28595731 |
T |
|
| Q |
208 |
atggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcatcattataaatgtaaatatgtcatatattatgatatcgttgtata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28595730 |
atggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcatgattataaatgtaaatatgtcatatattatgatattgttgtata |
28595631 |
T |
|
| Q |
308 |
ttaattaaattttaaattaacttaa-cttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatacttt |
406 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28595630 |
ttaattaaattttaaattaacttaaacttacagcaaatgatgcatcacgtgccgctattgctacaatgtcagcacaagacacaactccaggacatacttt |
28595531 |
T |
|
| Q |
407 |
ctctacatcagcttttgctttatcaataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtct |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28595530 |
ctctacatcagcttttgctttatcaataacttggaaacctcttacagaattaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtct |
28595431 |
T |
|
| Q |
507 |
agcaaaattgatgcatcacaaccctgtaaattaattaagatcaatt-aactaattaatatgatcataatgaatactttatatgattaatcaaaatacatg |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28595430 |
agcaaaattgatgcatcacaaccctgtaaattaattaagatcaattaaactaattaatatgatcataatgaatactttatatgattaatcaaaatacatg |
28595331 |
T |
|
| Q |
606 |
tatagaatt |
614 |
Q |
| |
|
||||||||| |
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|
| T |
28595330 |
tatagaatt |
28595322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 12 - 597
Target Start/End: Complemental strand, 32494151 - 32493545
Alignment:
| Q |
12 |
agcataggtttacaaattagtcatatacacaaatataaaga----tttgcatgtttgnnnnnnntgggttagtgatgaacttaccagataaagtcaccat |
107 |
Q |
| |
|
|||||||||||| |||| || |||| ||||||||||||| | | |||||||||| ||||| |||||||||||||||||||||||| ||||| |
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|
| T |
32494151 |
agcataggtttataaatcagccatacacacaaatataaataaacatgtgcatgtttgaaacaaatgggtcagtgatgaacttaccagataaagtaaccat |
32494052 |
T |
|
| Q |
108 |
atctttgagagtaagacctttattggtaaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
32494051 |
atctttgagagtaagacctttattggtaaaatgggctataagagttgttagatcatccgtaaattttggaaggtctgaattggcctgacttttgctagca |
32493952 |
T |
|
| Q |
208 |
atggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcatcattataaatgtaaatatgtcat-------------atattatg |
294 |
Q |
| |
|
| ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
32493951 |
acggtggagtctcttcttccgagttttaccgtccatgacggaccacccacctgcatcattataaatgtaaatatgtcattgtttgtatatatatattatg |
32493852 |
T |
|
| Q |
295 |
atatcgttgtatattaattaaattttaaattaacttaa-cttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactc |
393 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||| |||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |
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|
| T |
32493851 |
atatttttgtatattaa----atttcaaattaacttaaacttacagcaaatgatgcatcacgagctgctactgctacgatgtcagcacaagacacaactc |
32493756 |
T |
|
| Q |
394 |
caggacatactttctctacatcagcttttgctttatcaataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgt |
493 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32493755 |
cagggcatactttctccacattagcttttgctttatcaataacttcaaatcctcttacagagttaatatttggaagtgcactcttttcactctcaattgt |
32493656 |
T |
|
| Q |
494 |
ggaggtgtcgtctagcaaaattgatgcatcacaaccctgtaaattaa-ttaag-----atcaattaactaat-taatatgatcataatgaatactttata |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||| |
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|
| T |
32493655 |
ggaggtgtcgtctagcaaaattgatgcatcacaaccctgtaaattaatttaagatcttatcaataaactaatataatatgatcataatgaatactttata |
32493556 |
T |
|
| Q |
587 |
tgattaatcaa |
597 |
Q |
| |
|
|| |||||||| |
|
|
| T |
32493555 |
tggttaatcaa |
32493545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 342 - 542
Target Start/End: Original strand, 28587211 - 28587411
Alignment:
| Q |
342 |
aatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatactttctctacatcagcttttgctttatcaataacttgga |
441 |
Q |
| |
|
|||||||||||||||||||| | || | ||||| || |||||||||||||| ||||| |||||||| || |||| ||||||||||||||| | || | |
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|
| T |
28587211 |
aatgatgcatcacgtgctgccacagcaagtatgtccgcgcaagacacaactccgggacaaactttctcaacctcagattttgctttatcaatgatttcaa |
28587310 |
T |
|
| Q |
442 |
aacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaattgatgcatcacaaccctgtaaattaat |
541 |
Q |
| |
|
| |||||||| ||||||| ||||||| ||||||||||||| ||||| |||||||| | || || | |||||||||||||||||||||||| |||||||| |
|
|
| T |
28587311 |
atcctcttactgagttaacatttggacgtgcactcttttcgctctcgattgtggaactatcatccaacaaaattgatgcatcacaaccctgcaaattaat |
28587410 |
T |
|
| Q |
542 |
t |
542 |
Q |
| |
|
| |
|
|
| T |
28587411 |
t |
28587411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 134 - 265
Target Start/End: Original strand, 28592181 - 28592312
Alignment:
| Q |
134 |
taaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttt |
233 |
Q |
| |
|
||||||| |||||||||||||| ||||| || |||||| |||||||| | ||||||||||||||| || || ||||||||||||| | ||||||||| |
|
|
| T |
28592181 |
taaaatgagatataagagttgtaagatcgtccgtaaataacggaaggtcagtattggccaaacttttgcttgctgtggtagagtctctccgtccaagttt |
28592280 |
T |
|
| Q |
234 |
taccgtccatgatggaccacccacctgcatca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28592281 |
taccgtccatgatggaccacccacctgcatca |
28592312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 331 - 532
Target Start/End: Original strand, 28592386 - 28592587
Alignment:
| Q |
331 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatactttctctacatcagcttttgctttatc |
430 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||| ||||| || |||||||||||||| ||||| | |||||| || |||| |||||||||||| |
|
|
| T |
28592386 |
aacttacagcaaatgatgcatcacgtgctgccacagctagtatgtccgcgcaagacacaactccgggacaaattttctcaacctcagattttgctttatc |
28592485 |
T |
|
| Q |
431 |
aataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaattgatgcatcacaaccc |
530 |
Q |
| |
|
||| | || || |||||||| ||||||| ||| ||||||||| ||||||| ||||| ||||| | |||| || | |||||||||||||||||| ||| |
|
|
| T |
28592486 |
aatgatttcaaatcctcttactgagttaatattaggaagtgcattcttttcgctctcgattgtaggactgtcatccaacaaaattgatgcatcacatccc |
28592585 |
T |
|
| Q |
531 |
tg |
532 |
Q |
| |
|
|| |
|
|
| T |
28592586 |
tg |
28592587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 28587083 - 28587203
Alignment:
| Q |
134 |
taaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttt |
233 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||| |||||||| | ||||||||||||||| || || | ||||||||||||||||||||||| |
|
|
| T |
28587083 |
taaaatgagatataagagttgtaagatcgtctgtaaataacggaaggtcggtattggccaaacttttgcttgctgttgtagagtctcttcttccaagttt |
28587182 |
T |
|
| Q |
234 |
taccgtccatgatggaccacc |
254 |
Q |
| |
|
||| |||||||| || ||||| |
|
|
| T |
28587183 |
tactgtccatgacgggccacc |
28587203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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