View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_10 (Length: 421)
Name: NF9893_low_10
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 28 - 402
Target Start/End: Complemental strand, 6135386 - 6135012
Alignment:
| Q |
28 |
gtatacatgaaatcctagcaagttttacgtattcactgcaaaatattctaagtaaacacgaaaatgcagcatctaaaattttcagttgcattattgattt |
127 |
Q |
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| T |
6135386 |
gtatacatgaaatcctagcaagttttacgcattcactgcaaaatattctaagtaaacatgaaaatgcagcatctaaaattttcagttgcattattgattt |
6135287 |
T |
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| Q |
128 |
gttgagcattaaattaaataagttatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgtgcaatattgtttgtgtgcttgatcttg |
227 |
Q |
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| T |
6135286 |
gttgagcattaaattaaataagttatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgtgcaatattgttagtgtgtttgatcttg |
6135187 |
T |
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| Q |
228 |
tacaatttggagtgtcattagggataaaagaagcataagaggtgagatttttcttttggttagcacggatcacaagctcactaatttgaatatgttgagg |
327 |
Q |
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| T |
6135186 |
tacaatttggagtgtcattagggataaaagaagcataagaggtgagatttctcttttggttagcactgatcacaagctcactaatttggatatgttgagg |
6135087 |
T |
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| Q |
328 |
attgaagcaattcttaacggatgctggattctcaagggtcggtacactgctagaaaagataaaattagtgtcttg |
402 |
Q |
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| T |
6135086 |
attgaagcaattcttaacgggtgctggattctcgagggtcggtacacttctagaaaagataaaattagtgtcttg |
6135012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 6122141 - 6122081
Alignment:
| Q |
140 |
attaaataagttatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgt |
200 |
Q |
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| T |
6122141 |
attaaacaagtcatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgt |
6122081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 6122062 - 6122021
Alignment:
| Q |
203 |
aatattgtttgtgtgcttgatcttgtacaatttggagtgtca |
244 |
Q |
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| T |
6122062 |
aatattgttagtgtgcttgatcttgtacaatttggagtgtca |
6122021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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