View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_14 (Length: 397)
Name: NF9893_low_14
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 45 - 323
Target Start/End: Complemental strand, 7223333 - 7223058
Alignment:
| Q |
45 |
cactgcatattataagtcctcaaacaagaatccaaatatttgatctgaacattgacgagttattatgattatatatatacaaataaaagacaaaatagat |
144 |
Q |
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| T |
7223333 |
cactgcatattataaggcctcaaacaagaatccaaatacttgatctgaacattgacgagttattatgattatatatatacaaataaaagacaaaatagat |
7223234 |
T |
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| Q |
145 |
aggtactatgttagatgaagaagatactaaaaaacatcctagatcatagaggtatgtgaatcgagtttcacgcgccatagtttccattttgaaattagtt |
244 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7223233 |
aggtactatgttagatgaagaagatacta-aaaacatcctagatcatagaggtatgtgaatcgagtttcacgcg--atagtttccattttgaaattagtt |
7223137 |
T |
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| Q |
245 |
gtatgacagggcaggttgatggnnnnnnngttattggacgattacacagcattggctgaccggagttcggattttattt |
323 |
Q |
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| T |
7223136 |
gtatgacagggcaggttgatggtttttttgttattggacgattacaatgcattggctgaccggagttcggattttattt |
7223058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 7223037 - 7222989
Alignment:
| Q |
345 |
tggtgttatagtaagtcaacttcatcaaacgtacagtagtgttgtggaggatg |
397 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
7223037 |
tggtgttatagcaagtcaacttcatcaa----acagtagtgttgtggaggatg |
7222989 |
T |
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