View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_16 (Length: 389)
Name: NF9893_low_16
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_16 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 19140 - 19511
Alignment:
| Q |
8 |
gtaggaccacgagatcaactctccgaaccatgcttctagagccataatatggacaagttcccatagttcttccaaggttagcaagatcttcaatatccaa |
107 |
Q |
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| T |
19140 |
gtaggaccacgagatcaactctccgaaccatgcttctagagccataatatggacaagttcccatagttcttccaaggttagcaagatcttcaatatccaa |
19239 |
T |
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| Q |
108 |
aggcccttgttgagatacctcattcctgaattcttgttgtagtctgcgttttctaagcattgggcaaccagaggaggccttcgttctgcgtgctcctgtg |
207 |
Q |
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| T |
19240 |
aggcccttgttgagatacctcattcctgaattcatgttgtagtctgcgttttctaagcattgggcaaccagaggaggccttcgttctgcgtgctcctgtg |
19339 |
T |
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| Q |
208 |
cctgcttttaaattctgcaagaaagaacaagcattgttccagagacattagtactaaaatctatattaacttgatttttcaaatgtaaaaaacttttggt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19340 |
cctgcttttaaattctgcaagaaagaacaagcattgttccagagacattagtgctaaaatctatattaacttgatttttcaaatgtaaaaaacttttggt |
19439 |
T |
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| Q |
308 |
aacacttggtagtgagtaggatatttagaagctcaattggaattaaaaatttagcagaggttagaaatacct |
379 |
Q |
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| T |
19440 |
aacacttggtagtgagtaggatatttagaagctcaattggaattaaaaatttagcagaggttagaaatacct |
19511 |
T |
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