View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_17 (Length: 386)
Name: NF9893_low_17
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 34217229 - 34217594
Alignment:
| Q |
1 |
tcaccttatctctttagcaccaactaaaggcatgtcccatgtccgacaaaaatacaacaccaacacatgtaaatgtaaatgtaaatgtaccaattgcacc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34217229 |
tcaccttatctctttagcaccaactaaaggcatgtcccatgtccgacaaaaatacaacaccaacacatgt------aaatgtaaatgtaccaattgcacc |
34217322 |
T |
|
| Q |
101 |
cgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaatattaataatgtatgtgatttcaaac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34217323 |
cgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaatattaataatgtatgtgatttcaaac |
34217422 |
T |
|
| Q |
201 |
catgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaaatgaagatactaacagcgccnnnnn |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |
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| T |
34217423 |
catgcccttattgatagctataaacgacttggctctgttgtgaattaacttttctagattttttatggtttttaaatgaagatactaacagcaccaaaaa |
34217522 |
T |
|
| Q |
301 |
nngtaagac----taagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattc |
368 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34217523 |
atgtaagactaattaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattc |
34217594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 141 - 285
Target Start/End: Original strand, 10242146 - 10242292
Alignment:
| Q |
141 |
gtacctgtagcttggcttttacatttatgcagaatattaataatgtat--gtgatttcaaaccatgcccttattgatagctataaacgacttggctctgt |
238 |
Q |
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|||||||||||||| |||| ||||||||||||| || ||||||| ||| |||||| ||||| ||||||||||||||||||||||| |||||| ||||| |
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| T |
10242146 |
gtacctgtagcttgcctttaacatttatgcagagtactaataatatatatgtgattccaaactatgcccttattgatagctataaatgacttgaatctgt |
10242245 |
T |
|
| Q |
239 |
tgtgaattaacttttccagatttcttatggtttttaaatgaagatac |
285 |
Q |
| |
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|||||||||||||||||| | || ||||| ||||||||| ||||||| |
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| T |
10242246 |
tgtgaattaacttttccaaaattgttatgttttttaaattaagatac |
10242292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 10241785 - 10241838
Alignment:
| Q |
77 |
aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctaca |
130 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10241785 |
aaatgtaaatgtaccaactgcacccgaaattttacttcagtattacaatctaca |
10241838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 76 - 368
Target Start/End: Complemental strand, 2683451 - 2683159
Alignment:
| Q |
76 |
taaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaat |
175 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2683451 |
taaatgtaaatgtaccaactgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaat |
2683352 |
T |
|
| Q |
176 |
attaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaa |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2683351 |
attaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaa |
2683252 |
T |
|
| Q |
276 |
atgaagatactaacagcgccnnnnnnngtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattc |
368 |
Q |
| |
|
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2683251 |
atgaagatactaacaacaccaaaaaatgtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattc |
2683159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 77 - 368
Target Start/End: Original strand, 5479861 - 5480152
Alignment:
| Q |
77 |
aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaata |
176 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5479861 |
aaatgtaaatgtaccaactgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaata |
5479960 |
T |
|
| Q |
177 |
ttaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5479961 |
ttaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaaa |
5480060 |
T |
|
| Q |
277 |
tgaagatactaacagcgccnnnnnnngtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattc |
368 |
Q |
| |
|
|||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5480061 |
tgaagatactaacaacaccaaaaaatgtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattc |
5480152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 77 - 368
Target Start/End: Complemental strand, 45006876 - 45006585
Alignment:
| Q |
77 |
aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaata |
176 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45006876 |
aaatgtaaatgtaccaactgcacccgaaattttacttcagtattacattctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaata |
45006777 |
T |
|
| Q |
177 |
ttaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45006776 |
ttaataatgtatgtgatttcaaaccatgcccttattgatagctataaacgacttggctctgttgtgaattaacttttccagatttcttatggtttttaaa |
45006677 |
T |
|
| Q |
277 |
tgaagatactaacagcgccnnnnnnngtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattc |
368 |
Q |
| |
|
|||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45006676 |
tgaagatactaacaacaccaaaaaatgtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattc |
45006585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 25575557 - 25575658
Alignment:
| Q |
77 |
aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgtacctgtagcttggcttttacatttatgcagaata |
176 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
25575557 |
aaatgtaaatgtaccaactgcacccgaaattttacttcactattacaatctaaacaatttaaatgtacctatagcttggcttttacatttatgcagaata |
25575656 |
T |
|
| Q |
177 |
tt |
178 |
Q |
| |
|
|| |
|
|
| T |
25575657 |
tt |
25575658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 5421368 - 5421303
Alignment:
| Q |
303 |
gtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattc |
368 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
5421368 |
gtaagactaactaattattgctataattcatatcatattattgtatatttttttcaatgtatattc |
5421303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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