View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_18 (Length: 385)
Name: NF9893_low_18
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 53044975 - 53045332
Alignment:
| Q |
19 |
aaaggggccataataagactatgttagagattttttctagcgatcaagttaggagccagtcaactgtaaaatgatttatttctcctactagtgataggta |
118 |
Q |
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| T |
53044975 |
aaaggggccataataagactatgttagagattttttctagcgattaagttaggagccagtcaactgtaaaatgatttatttctcctactagtgataggta |
53045074 |
T |
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| Q |
119 |
tataaccttatttaaggattgaaaaagatattctgagtagcgtccttttggcttggtattccaattaagtttctcacattctacaacataaggatttaag |
218 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53045075 |
tataacctcatttaaggattgaaaaagctattctgagtagcgtccttttggcttggtattccaattaattttctcacattctacaacataaggatttaag |
53045174 |
T |
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| Q |
219 |
gattcaaaatctcttgagaaatttcaaaagacatgttctgtacttatccttacttggatggattgattgtgattttaataatagacttcatttccaacat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53045175 |
gattcaaaatctcttgagaaatttcaaaagacatgttctgtacttatccttacttggatgaattgattgtgattttaataatagacttcatttccaacat |
53045274 |
T |
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| Q |
319 |
tttcttttgcttaattgtttatgttgttgacaagtgttataccataactccacaggtt |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
53045275 |
tttcttttgcttaattgtttatgttgttgacaagtgttataccataacttctcaggtt |
53045332 |
T |
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