View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_19 (Length: 366)
Name: NF9893_low_19
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 37097237 - 37097588
Alignment:
| Q |
1 |
cggtttttgtttagagatcaaattgttgacaaattcgagaatagaattacaaacttttttagtttagaaacctattttgaaaaactttaaattgttcagg |
100 |
Q |
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| T |
37097237 |
cggtttttgtttagagatcaaattattgacaaattcaagaatagaattacaaacttttttagtttagaaacctattttgaaaaactttaaattgttcagg |
37097336 |
T |
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| Q |
101 |
gaccttcaaaataatcaagcctaaattcaataaatcaatataaagaaatcaagataatgcatgatatgattatgaacattaatatcaagatgcatgtgtg |
200 |
Q |
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| T |
37097337 |
gaccttcaaaataataaaacctaaattcaataaatcaatataaagaaatcaagataatgcatgatatgattatgaacattaatatcaagatgcatgtgtg |
37097436 |
T |
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| Q |
201 |
ctaagaaacattccagcggcataattgttgatatatgaaatcgtgaaagatgtagaatttagttaccgatgggtaaggccatttgtaatgcctgctccac |
300 |
Q |
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| T |
37097437 |
ctaagaaacattccagtgacataattgttgatatatgaaatcgtgaaagatgtagaatttagttaccgatgggtaaggccatttgtaatgcctgctccac |
37097536 |
T |
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| Q |
301 |
caatcaagtagttgttgtcgagcttcctttggtaactttccattctttttct |
352 |
Q |
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| T |
37097537 |
caatcaagtagttgttgtcgagcttcctttggtaactttccattctttttct |
37097588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 8792796 - 8792850
Alignment:
| Q |
263 |
ttaccgatgggtaaggccatttgtaatgcctgctccaccaatcaagtagttgttg |
317 |
Q |
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| T |
8792796 |
ttacagatgggtaaggccatttgtaatgtctgctccaccattcaagcaattgttg |
8792850 |
T |
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