View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_21 (Length: 361)
Name: NF9893_low_21
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 344
Target Start/End: Original strand, 14597788 - 14598131
Alignment:
| Q |
5 |
tgcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaa |
104 |
Q |
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| T |
14597788 |
tgcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaa |
14597887 |
T |
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| Q |
105 |
tctatgatcttgtcgtctgcacttcccattaatggatcgggactgggcggcttcaacataacctatttatatacatgcatgcatttaaattatg--atat |
202 |
Q |
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| T |
14597888 |
tctatgatcttgtcgtcttcacttcccattaacggatcagggctgggcggcttcaacatcacctatttatatacatgcatgcatttaaattatgaaatat |
14597987 |
T |
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| Q |
203 |
atgtgaaacataagttaaagttcaggattgaatttattcttag--gtataatatatgagtaaatacctgaagtattccggcatggtcacctttagcatgt |
300 |
Q |
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| T |
14597988 |
atgtgaaacataagttaaagttcaggattgaatttattcttagatatataatatatgagtaaatacctgaagtattccggcatggtcacctttagcatgt |
14598087 |
T |
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| Q |
301 |
tccctagaagaagaaccccaagtgccgggccaatgggtgccatc |
344 |
Q |
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| T |
14598088 |
tcgctagaagaagaaccccaagtgccgggccaatgggtgccatc |
14598131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 14610717 - 14610518
Alignment:
| Q |
5 |
tgcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacatatactaacatcggcaaacgtgtatctacctcagagaaa |
104 |
Q |
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| T |
14610717 |
tgcattcatggcaccggctttcttgttatgatcataacctggcctcttctctcgagatacataaaccaacatcggcaaacgtgtatctacgtcactgaaa |
14610618 |
T |
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| Q |
105 |
tctatgatcttgtcgtctgcacttcccattaatggatcgggactgggcggcttcaacataacctatttatatacatgcatgcatttaaattatgatatat |
204 |
Q |
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| T |
14610617 |
tcaatgatgttgttgtttgcacttcgcgttaatggatcaggacttggaggctttagcatcacctactcatatacacgcatatagttaaattaagatatat |
14610518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 14610456 - 14610345
Alignment:
| Q |
233 |
aatttattcttaggtataatatatgagtaaatacctgaagtattccggcatggtcacctttagcatgttccctagaagaagaaccccaagtgccgggcca |
332 |
Q |
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| T |
14610456 |
aatttattcttagatataatacacaagaaaatacctgaagtattccagaatggtcacctttagcatgttcgctagaagaagaagcccacgtaccaggcca |
14610357 |
T |
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| Q |
333 |
atgggtgccatc |
344 |
Q |
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| T |
14610356 |
atgggtgccatc |
14610345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 44634219 - 44634158
Alignment:
| Q |
6 |
gcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacata |
67 |
Q |
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| T |
44634219 |
gcattcatggcgccagctttcttgttgtgatcatatcccggcctcttctcacgagacacata |
44634158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 29918143 - 29918207
Alignment:
| Q |
3 |
aatgcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacata |
67 |
Q |
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| T |
29918143 |
aatgcattcatggccccagcttttttgttgtgatcgtaacctggacgtttctctctagaaacata |
29918207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 54383191 - 54383252
Alignment:
| Q |
6 |
gcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacata |
67 |
Q |
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| T |
54383191 |
gcattcatggcaccggctttcttgtggtgttgaaatcctggccttttctctctagatacata |
54383252 |
T |
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