View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9893_low_22 (Length: 359)
Name: NF9893_low_22
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_22 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 6 - 359
Target Start/End: Original strand, 37096799 - 37097152
Alignment:
| Q |
6 |
agaagcataggcatggcatccatagggaatggcttgcacatgacattttccatgtagtaatttgtggcatccatcacagcaaattgcatatcctcagaag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37096799 |
agaagcataggcatggcatccatagggaatggcttgcacatgacattttccatgtagtaatttgtggcatccatcacagcaaattgcatatcctcagaag |
37096898 |
T |
|
| Q |
106 |
gcttccagtgacgttttctctgattaatgaaccaattgttgatctgcttcaaatctaggcctgttgattctgcaagggcttgcttttgggattcctacat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37096899 |
gcttccagtgacgttttctctgattaatgaaccaattgttgatctgcttcaaatctaggcctgttgattctgcaagggcttgcttttgggattcctacat |
37096998 |
T |
|
| Q |
206 |
gttcaccaaatcacattttaaggtttcatttttcaaatatgattaagataatttcagagtttaaaaaactataaacaaggttttcacattaatatataca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37096999 |
gttcaccaaatcacattttaaggtttcatttttcaaatatgattaagataatttcagagtttaaaaaactataaacaaggttttcacattaatatataca |
37097098 |
T |
|
| Q |
306 |
atgttatttcttccatcnnnnnnntgttactaagcctctaatgtgtttgatctc |
359 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37097099 |
atgttatttcttccatcaaaaaaatgttactaagcctctaatgtgtttgatctc |
37097152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 14552742 - 14552662
Alignment:
| Q |
75 |
tccatcacagcaaattgcatatcctcagaaggcttccagtgacgttttctctgattaatgaaccaattgttgatctgcttc |
155 |
Q |
| |
|
||||||| || ||| ||||||| |||||| || ||||| ||||||||||| |||||||| ||||||||||| || |||||| |
|
|
| T |
14552742 |
tccatcatagaaaactgcatattctcagatggtttccaatgacgttttctttgattaataaaccaattgttaatttgcttc |
14552662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 8791891 - 8791995
Alignment:
| Q |
74 |
atccatcacagcaaattgcatatcctcagaaggcttccagtgacgttttctctgattaatgaaccaattgttgatctgcttcaaatctaggcctgttgat |
173 |
Q |
| |
|
||||||||| |||| ||||| ||||| |||||||||||||| ||||| || |||||||| ||||| ||||| || |||||| ||| || ||||||||| |
|
|
| T |
8791891 |
atccatcaccacaaactgcatgtcctctgaaggcttccagtgccgtttcctttgattaataaaccagttgtttatttgcttctgatcaagacctgttgat |
8791990 |
T |
|
| Q |
174 |
tctgc |
178 |
Q |
| |
|
||||| |
|
|
| T |
8791991 |
tctgc |
8791995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 8780396 - 8780452
Alignment:
| Q |
74 |
atccatcacagcaaattgcatatcctcagaaggcttccagtgacgttttctctgatt |
130 |
Q |
| |
|
||||||||| |||| ||||| ||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
8780396 |
atccatcaccacaaactgcatgtcctctgaaggcttccagtgccgttttctttgatt |
8780452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University