View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_23 (Length: 356)
Name: NF9893_low_23
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 8755234 - 8755558
Alignment:
| Q |
16 |
gtactgtaaagaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgcttccaatacagaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8755234 |
gtactgtaaagaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgcttccaatacagaaaa |
8755333 |
T |
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| Q |
116 |
tgttccttgactaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctacttgatctattgtgcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8755334 |
tgttccttgactaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctacttgatctattgtgcaa |
8755433 |
T |
|
| Q |
216 |
aggctccattgattttttaatcttccatcttgtgtaagatcttgttgtggattttttataaggcatgctttgtttagaaacctaccaatcaaatcataaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8755434 |
aggctccattgattttttaatcttccatcttgtgtaagatcttgttgtggattttttataaggcatgctttgtttagaaacctaccaatcaaatcataaa |
8755533 |
T |
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| Q |
316 |
cctaagccaattagccatcacatat |
340 |
Q |
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||||||||||||||||||||||||| |
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| T |
8755534 |
cctaagccaattagccatcacatat |
8755558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 25 - 329
Target Start/End: Original strand, 8747900 - 8748204
Alignment:
| Q |
25 |
agaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgcttccaatacagaaaatgttccttg |
124 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | || | |||||||||||| |
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| T |
8747900 |
agaggaccatgaatgttgacattgaagccgcggggatttcaaagttcgaagttatgtggcggttcatggtggatgcttctagtatattaaatgttccttg |
8747999 |
T |
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| Q |
125 |
actaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctacttgatctattgtgcaaaggctccat |
224 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8748000 |
actcaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctacttgatctattgtgctaaggctccat |
8748099 |
T |
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| Q |
225 |
tgattttttaatcttccatcttgtgtaagatcttgttgtggattttttataaggcatgctttgtttagaaacctaccaatcaaatcataaacctaagcca |
324 |
Q |
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|| ||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||| |||||||| | | ||| |||||| |
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| T |
8748100 |
tggttttttaatcttctatcttgtgtaagatcttgttcttgatgttttataaggcatgctttatttagaaaccttgcaatcaaagtagataccaaagcca |
8748199 |
T |
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| Q |
325 |
attag |
329 |
Q |
| |
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||||| |
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| T |
8748200 |
attag |
8748204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 8765773 - 8766065
Alignment:
| Q |
16 |
gtactgtaaagaggatcatgaatgttgacattgaagccgcggggatttcaaagttcgaaaatatgttacggttcatggtggatgcttccaatacagaaaa |
115 |
Q |
| |
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|||| |||||||| | ||||||||||| || |||||| ||||||||||| ||||||||| |||| |||||||||| ||||||||| | |||| |||| |
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| T |
8765773 |
gtacagtaaagagaaccatgaatgttgccactgaagctgcggggatttcgaagttcgaagtaatgtggcggttcatggaggatgcttctagtacataaaa |
8765872 |
T |
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| Q |
116 |
tgttccttgactaaaatttatagacattatcattcctgttgtccaaattggaatgattttgataattgctttgaatgcttctacttgatctattgtgcaa |
215 |
Q |
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|||||||||||| | ||| ||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8765873 |
tgttccttgactcatattaatatacattatcattcctgttatccaaattgggatgattttgatcattgctttgaatgcttctacttgatctattgtgcaa |
8765972 |
T |
|
| Q |
216 |
aggctccattgattttttaatcttccatcttg--tgtaagatcttgttgtggattttttataaggcatgctttgtttagaaacctaccaatcaaatca |
311 |
Q |
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|||||||||| |||| | | ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8765973 |
tggctccattggttttgaagttctccatcttggttgtaa-----tcttgtggattttttataaggcatgctttgtttagaaacctttcaatcaaatca |
8766065 |
T |
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