View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_25 (Length: 349)
Name: NF9893_low_25
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 27738278 - 27737956
Alignment:
| Q |
9 |
tggtgttgtaagtaagtaatagtactggtaccactgaatcacaattcaagttttcaaagtactattacagaagtgtttgctttctgtgatttgaatcctt |
108 |
Q |
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| T |
27738278 |
tggtgttgtaagtaagtaatagtactggtaccactgaatcacaattcaagttttcaaagtactattacagaagtgtttgctttctgtgatttgaatcctt |
27738179 |
T |
|
| Q |
109 |
caacgggacccaaagcctcaaaagagccaaagtttgcagagagggaaggcaatgacagagttgagttttgatttagcagaataggaatagatgagggcat |
208 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27738178 |
caacgggaccaaaagcctcaaaagagccaaagtttgcagagagggaaggcaatgacagagttgagttttgatttagcagaataggaatagatgagggcaa |
27738079 |
T |
|
| Q |
209 |
gaggcatgacttggacttggagttttcaagagtttgttcagagcatctgagccaaaagttaatgaacttttggtaggtgaagtgtgttgagtttttgaga |
308 |
Q |
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| T |
27738078 |
attgcatgacttggacttggagttttcaagagtttgttcagagcatctgagccaaaagttaatgaacttttggtaggtgaagtgtgttgagtttttgaga |
27737979 |
T |
|
| Q |
309 |
atttggagaattagagccaatag |
331 |
Q |
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| T |
27737978 |
atttggagaattagagccaatag |
27737956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 27726308 - 27726077
Alignment:
| Q |
9 |
tggtgttgtaagtaagtaatagtactggtaccactgaatcacaattcaagttttcaaagtactattacagaagtgtttgctttctgtgatttgaatcctt |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
27726308 |
tggtgttgaaagtaagtaatagtactggtaccactgtagcacaattcaagttttcaaagtactattacagaagtgtttgctttttgtgatttggatcctt |
27726209 |
T |
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| Q |
109 |
caacgggacccaaagcctcaaaagagccaaagtttgcagagagggaaggcaatgacagagttgagttttgatttagcagaataggaatagatgagggcat |
208 |
Q |
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|||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
27726208 |
caacgggaccaaaagactcaaaa-agccaaagtttgcagagagggaaggcaatgacagagttgagttttgatttagcagaatgggaatagacgagggcat |
27726110 |
T |
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| Q |
209 |
gaggcatgacttggacttggagttttcaagagt |
241 |
Q |
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|||||||| ||||||||||||||| |||||||| |
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| T |
27726109 |
gaggcatggcttggacttggagttatcaagagt |
27726077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 21251130 - 21251186
Alignment:
| Q |
10 |
ggtgttgtaagtaagtaatagtactggtaccactgaatcacaattcaagttttcaaa |
66 |
Q |
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|||||| ||||||||||||||||||||||||| | || ||||||||||||||||||| |
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| T |
21251130 |
ggtgttataagtaagtaatagtactggtaccattaaagcacaattcaagttttcaaa |
21251186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 21250277 - 21250330
Alignment:
| Q |
9 |
tggtgttgtaagtaagtaatagtactggtaccactgaatcacaattcaagtttt |
62 |
Q |
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||||||||||||||||||||||||| ||||||| || | ||||||||||||||| |
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| T |
21250277 |
tggtgttgtaagtaagtaatagtaccggtaccattggagcacaattcaagtttt |
21250330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 31822207 - 31822242
Alignment:
| Q |
293 |
tgttgagtttttgagaatttggagaattagagccaa |
328 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
31822207 |
tgttgagtttatgagaatttggagaattagagccaa |
31822242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 3072469 - 3072420
Alignment:
| Q |
20 |
gtaagtaatagtactggtaccactgaatcacaattcaagttttcaaagta |
69 |
Q |
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|||||||||||||||||||||| ||| ||||| | |||||||||||||| |
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| T |
3072469 |
gtaagtaatagtactggtaccatagaagcacaactgaagttttcaaagta |
3072420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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