View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_low_26 (Length: 345)

Name: NF9893_low_26
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_low_26
NF9893_low_26
[»] chr2 (2 HSPs)
chr2 (1-288)||(36152546-36152833)
chr2 (2-288)||(36157473-36157769)
[»] chr1 (1 HSPs)
chr1 (2-66)||(26952717-26952781)
[»] chr4 (1 HSPs)
chr4 (293-345)||(48911844-48911897)
[»] chr5 (2 HSPs)
chr5 (3-67)||(39261289-39261353)
chr5 (2-66)||(41708272-41708336)
[»] chr6 (1 HSPs)
chr6 (2-67)||(25160253-25160318)
[»] chr3 (1 HSPs)
chr3 (25-65)||(46586826-46586866)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 36152546 - 36152833
Alignment:
Q  1 ttatcaagactttaccaaatatagaagatacatactaaatatgaaatatatttacatattctaatacgcatcaatccaatttcttatttaattttttctt 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36152546 ttatcaagactttaccaaatatagaagatagatactaaatatgaaatatatttacatattctaatacgcgtcaatccaatttcttatttaattttttctt 36152645  T
Q  101 aaaagaaagagcaagagctcttgaccatacatgagtgtagataattattttatttgtttcctaggtcatatttagtattcttctacaaaagaagttgtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36152646 aaaagaaagagcaagagctcttgaccatacatgagtgtagataattattttatttgtttcctaggtcatatttagtattcttctacaaaagaagttgtaa 36152745  T
Q  201 tagatatagcagaaatagaccatagagagacacaagaccaaataaaggacaattcagaaatggcacttacattcttttgttcatctca 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36152746 tagatatagcagaaatagaccatagagagacacaagaccaaataaaggacaattcagaaatggcacttacattcttttgttcatctca 36152833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 2 - 288
Target Start/End: Original strand, 36157473 - 36157769
Alignment:
Q  2 tatcaagactttaccaaatatagaagatacatactaa---atatgaaatatatttacatattctaatacgcatcaatccaatttcttatttaattttttc 98  Q
    ||||||||| |||||||||||||||||||||||||||   |||| ||||| ||||| |||||||||||||| |||| ||| |||||||||| ||||||||    
T  36157473 tatcaagacgttaccaaatatagaagatacatactaataaatataaaataaatttatatattctaatacgcgtcaacccactttcttattttattttttc 36157572  T
Q  99 ttaaaagaaagagcaagagctcttgaccatacatgagtgtagataattattttatttgtttcct---aggtcatatttagtattcttctacaaaagaagt 195  Q
    ||| |||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||||   ||||| | || ||||||||||||||||||||||    
T  36157573 ttacaagaaagagcaagaactcctgaccatacatgagtgtagataa-taatttatttgtttcctagaaggtcttgttcagtattcttctacaaaagaagt 36157671  T
Q  196 tgtaatagatatagcagaaatagacc-------atagagagacacaagaccaaataaaggacaattcagaaatggcacttacattcttttgttcatctca 288  Q
    | ||||||  |||||||||||| |||       | ||||||||| |||| ||||| | |||||||||||    |||||||||||| ||||||||||||||    
T  36157672 tttaatag--atagcagaaataaaccacagtcaacagagagacaaaagatcaaatcatggacaattcaggccaggcacttacattattttgttcatctca 36157769  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 26952717 - 26952781
Alignment:
Q  2 tatcaagactttaccaaatatagaagatacatactaaatatgaaatatatttacatattctaata 66  Q
    ||||||||| |||| ||||||| ||||||||||||| |||| ||||||||||||||||| |||||    
T  26952717 tatcaagacgttactaaatataaaagatacatactacatataaaatatatttacatattttaata 26952781  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 48911844 - 48911897
Alignment:
Q  293 acactctctttttgaatctgcttctttt-ttattcctcatcttcctcattctat 345  Q
    ||||||||||| |||||||||||||||| | |||||||||||||||||||||||    
T  48911844 acactctctttatgaatctgcttcttttgtaattcctcatcttcctcattctat 48911897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 39261289 - 39261353
Alignment:
Q  3 atcaagactttaccaaatatagaagatacatactaaatatgaaatatatttacatattctaatac 67  Q
    |||||||| |||||||||||| || ||||||| ||||||| ||||| ||||||| ||||||||||    
T  39261289 atcaagacattaccaaatataaaatatacatattaaatataaaatacatttacacattctaatac 39261353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 41708336 - 41708272
Alignment:
Q  2 tatcaagactttaccaaatatagaagatacatactaaatatgaaatatatttacatattctaata 66  Q
    ||||||||  |||| ||||||| |||||||||||||||||| ||  |||||| ||||||||||||    
T  41708336 tatcaagatgttactaaatatataagatacatactaaatataaatgatatttgcatattctaata 41708272  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 25160253 - 25160318
Alignment:
Q  2 tatcaagactttaccaaatatagaagatacatactaaatatgaaatatatttacatattctaatac 67  Q
    ||||||||  |||||||||||| ||||||||| | |||| | |||| ||||| |||||||||||||    
T  25160253 tatcaagatgttaccaaatataaaagatacatgcaaaatttaaaatgtattttcatattctaatac 25160318  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 46586866 - 46586826
Alignment:
Q  25 aagatacatactaaatatgaaatatatttacatattctaat 65  Q
    |||||||||||||||||| ||| |||||||| |||||||||    
T  46586866 aagatacatactaaatataaaagatatttacctattctaat 46586826  T

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