View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_27 (Length: 345)
Name: NF9893_low_27
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 46 - 335
Target Start/End: Complemental strand, 51418698 - 51418409
Alignment:
| Q |
46 |
cttggtccacctcaaacacctcctcaaccgtctcccttttcgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccggcg |
145 |
Q |
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| T |
51418698 |
cttgatccacctcaaacacctcctcaaccgtctcccttttcgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccggcg |
51418599 |
T |
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| Q |
146 |
actgcgttctgcaaccggagataatagcttcctcctactactgtttacaccacgagagagacgcggtggactgctgctacagctgaactgatactccaac |
245 |
Q |
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| T |
51418598 |
actgcgttctgccaccggagataatagcttcctcctactactgtttgcaccacgagagagacgcggtggactgctgctacagctgaactgatactccaac |
51418499 |
T |
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| Q |
246 |
ggtgaaatgaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatg |
335 |
Q |
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| T |
51418498 |
ggtgaaataaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatg |
51418409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 160 - 335
Target Start/End: Complemental strand, 51413534 - 51413356
Alignment:
| Q |
160 |
ccggagataatagcttcctcctactactgtttacaccac---gagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaa |
256 |
Q |
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| T |
51413534 |
ccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatgaa |
51413435 |
T |
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| Q |
257 |
atacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatg |
335 |
Q |
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| T |
51413434 |
atacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgctgttcaatgctttccctatg |
51413356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 51416581 - 51416472
Alignment:
| Q |
160 |
ccggagataatagcttcctcctactactgtttacacca----cgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatga |
255 |
Q |
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| T |
51416581 |
ccggagataatagctttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacga |
51416482 |
T |
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| Q |
256 |
aatacatatc |
265 |
Q |
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| T |
51416481 |
aatacatatc |
51416472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 51416639 - 51416582
Alignment:
| Q |
85 |
tcgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccg |
142 |
Q |
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| T |
51416639 |
tcgtcatctttacgcgcctccattcatttctggttccacgacataccctcatttaccg |
51416582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 29323760 - 29323690
Alignment:
| Q |
234 |
tgatactccaacggtgaaatgaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtgctt |
304 |
Q |
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| T |
29323760 |
tgatactccaacggtgaaacgaaatacatatcagcatcacgtggacggcacatgagtgcttcgtggtgctt |
29323690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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