View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_29 (Length: 344)
Name: NF9893_low_29
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 48729595 - 48729260
Alignment:
| Q |
11 |
agatgtatcaacttttggttacccaaatgtttttctttttg--attgaaaatcaaaatcaatctatgtttcaatatattaattaattcaactattatgtt |
108 |
Q |
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| T |
48729595 |
agatatatcaacttttgttgacccaaatgtttttttttttattattgaaaatcaaaatcaatctatgtttcaatatattaattaattcaactattatgtt |
48729496 |
T |
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| Q |
109 |
ggccttagagtttgacattttcaaagtattaataatttttcgcttctcctattttaaaaaattaattaattcagctatggtcatttcatattgtgcaggc |
208 |
Q |
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| T |
48729495 |
ggccttagagtttgacattttcaaagtattaataatttttcgcttctcctatttaaaaaaattaattaattcagctatggtcatttcatattgtgcaggc |
48729396 |
T |
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| Q |
209 |
agttgaattgttgatagatagcaatatagacataaatgccaagaatttagatgaagaaacagcattggacatagtggagcagattcagagccaagtttat |
308 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48729395 |
agttggattgttgatagatagcaatatagacataaatgccaagaatttagatgaacaaacagcattggacatagtggagcagattcagagccaagtttat |
48729296 |
T |
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| Q |
309 |
agtgcagaaatgaaggacatgttgatcaaagcagga |
344 |
Q |
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| T |
48729295 |
agtgcagaaatgaaggacatgttgatcaaagcagga |
48729260 |
T |
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