View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_30 (Length: 339)
Name: NF9893_low_30
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 40549682 - 40549378
Alignment:
| Q |
12 |
agagaaattaatatgtacaggaatatataaacacataaaacgaaagatcttcgtattaatattttgaacttcaaaacatgtatcaagatgataacatatt |
111 |
Q |
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| T |
40549682 |
agagaaattaataggtacaggaatatataaagacataaaacgaaagatcttcgtattaatattttgaacttcaaaacatgtatcaagatgataacatatt |
40549583 |
T |
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| Q |
112 |
ctggttctgaaactacaatgcagaaaatgcaggaaaataaaaaggaaaccgaatggcctaagcaattagaaagtgcctttcaaattcttggtaattctgg |
211 |
Q |
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| T |
40549582 |
ctggttctgaaactacaatgaagaaaatgctggaaaataaaaaggaaaccgaatggcctaagcaattagaaagtgcctttcaaattcttggtaattctgg |
40549483 |
T |
|
| Q |
212 |
ttctaactacttctttttcctttaagaccaagctccttaatcatatttgtagttaaatcaaaccaaactatttcattatcttctttctcaaagaatattt |
311 |
Q |
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|||| |||| || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40549482 |
ttctgacta-------tttcattaagaccaagctccttaatcatgtttgtagttaaatcaaaccaaactatttcattatcttctttctcaaagaatattt |
40549390 |
T |
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| Q |
312 |
cccccttcatac |
323 |
Q |
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|||||||||||| |
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| T |
40549389 |
cccccttcatac |
40549378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 31789993 - 31789887
Alignment:
| Q |
99 |
atgataacatattctgg-ttctgaaactacaatgcagaaaatgcaggaaaataaaaaggaaaccgaatggcctaagcaattagaaagtgcctttcaaatt |
197 |
Q |
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| T |
31789993 |
atgataacatat-ctggattctgaaactacaatggagaatatgcaggcata-aaaaaggaaagcaaaaggcctaggcaacaagaatgtgtctttcaaata |
31789896 |
T |
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| Q |
198 |
cttggtaat |
206 |
Q |
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|||| |||| |
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| T |
31789895 |
cttgataat |
31789887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 16921186 - 16921116
Alignment:
| Q |
227 |
tttcctttaagaccaagctccttaatcatatttgtagttaaatcaaaccaaactatttcattatcttcttt |
297 |
Q |
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|||||||||| ||||||||| | |||||| | ||| | ||||||||||| |||||||||||||| ||||| |
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| T |
16921186 |
tttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttt |
16921116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 29124352 - 29124260
Alignment:
| Q |
231 |
ctttaagaccaagctccttaatcatatttgtagttaaatcaaaccaaactatttcattatcttctttctcaaagaatatttcccccttcatac |
323 |
Q |
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|||||| ||||||||||| |||||| | ||| | |||||||||||| ||| ||| ||||||| | | |||||||||||||||||||||| |
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| T |
29124352 |
ctttaaaaccaagctcctcaatcatttgggtactcaaatcaaaccaagctagttctttatcttttctaatgaagaatatttcccccttcatac |
29124260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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