View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_31 (Length: 337)
Name: NF9893_low_31
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_31 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 7801927 - 7801591
Alignment:
| Q |
1 |
aagacaacattactgagaatgaaaagatttaacgccaacacaacaaaacagattgagcaccaacataacacaacgaaaattgagattgagtgaattgaaa |
100 |
Q |
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| T |
7801927 |
aagacaacattactgagaatgaaaagatttaacgccaacacaacaaaacagattgagcaccaacataacacaacgaaaattgagattgagtgaattgaaa |
7801828 |
T |
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| Q |
101 |
aactgaaaagcatatcaaactccaaaatatcactaattgaattgaaactaacaactacttaggtttcctctactaccaattgacctagttatatatttat |
200 |
Q |
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| T |
7801827 |
aactgaaaagcatatcaaactccaaaatatcactaattgaattgaaactaacaactacttaggtttcctctactaccaattgacctagttatatatttat |
7801728 |
T |
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| Q |
201 |
accgatcaatctacaagagcaagataagggtataaatttagcataacaaaactcagaaatgaattgattgacaaaaacataatacggaagcaattaagtt |
300 |
Q |
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| T |
7801727 |
accgatcaatctacaagagcaagataagggtataaatttagcataacaaaactcagaaatgaattgattgacaaaaacataatacgaaagcaattaagtt |
7801628 |
T |
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| Q |
301 |
agatactaccagaaaaatctcataaccacaagaaaac |
337 |
Q |
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| T |
7801627 |
agatactaccagaaaaatctcataaccacaagaaaac |
7801591 |
T |
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