View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_33 (Length: 325)
Name: NF9893_low_33
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 29667052 - 29667342
Alignment:
| Q |
17 |
catcaaggccttgtaaaaattaacatattctcaatcataatttagatctctccaaattaaggcaaagttaccaaatcccaccacagctgtgaattaacct |
116 |
Q |
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| T |
29667052 |
catcaaggccttgtaaaaattaacatattctcaatcataatttagatctctccaaattaaggcaaagttaccaaatcccaccacagctgtgaattaacct |
29667151 |
T |
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| Q |
117 |
aatattggaggcggtcgattttnnnnnnnnnnncatgatgagaatgacatgtagtagaatcattgtaagagaacaagaaatatatagaagagtgaaagag |
216 |
Q |
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| T |
29667152 |
aatattggaggcggtcgattttaaaaaaaaa--catgatgagaatgatatgtagtagaatcattgtaagagaacaagaaatatatagaagagtgagagag |
29667249 |
T |
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| Q |
217 |
atgagaactagactgagaaacaca-----ataattaagtagtaaactgaaattcagagacaagaaattcatcaatatagagaattaagagcaa |
304 |
Q |
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| T |
29667250 |
atgagaactagactgacaaacacaataatataattaagtagtaaactgaaattcagacacaagaaattcatcaatatagagaattaagagcaa |
29667342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 29680430 - 29680710
Alignment:
| Q |
17 |
catcaaggccttgtaaaaattaacatattctcaatcataatttagatctctccaaattaaggcaaagttaccaaatcccaccacagctgtgaattaacct |
116 |
Q |
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| T |
29680430 |
catcaaggcct-gtaaaaattaacatattctcaaacaagatttagatctctccaaa----gacaaagttactaaatcccaca-----tgtgaactaacct |
29680519 |
T |
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| Q |
117 |
aatattggaggcggtcgattttnnnnnnnnnnn--catgatgagaatgacatgtagtagaatcattgtaagagaacaagaaatatatagaagagtgaaag |
214 |
Q |
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| T |
29680520 |
aatattcgaggcggtcgtttttaaaagaacatgaccaggatga---tgatatgtagtataatcattttaagagaacaagaaataga-aga-gagagagag |
29680614 |
T |
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| Q |
215 |
agatgagaactagactgagaaacacaataattaagtagtaaactgaaattcagagacaagaaattcatcaatatagagaattaagagcaaccatct |
310 |
Q |
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| T |
29680615 |
agatgagaactagactgacaaacacaataattaagtagtaaactgaaattcagacacaagaaattcatcaatatagagaattaagagcaaccatct |
29680710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 29686396 - 29686487
Alignment:
| Q |
213 |
agagatgagaactagactgagaaacacaataattaagtagtaaactgaaattcagagacaagaaattcatcaatatagagaattaagagcaac |
305 |
Q |
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| T |
29686396 |
agagatgggaactagactgacaaacacaataattaagttgtaat-tgaaattcagacacaagaaatttatcaatatagagaattaagagcaac |
29686487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 29668722 - 29668814
Alignment:
| Q |
30 |
taaaaattaacatattctcaatcataatttagatctctccaaattaaggcaaagttaccaaatcccaccacagctgtgaattaacctaatattggaggcg |
129 |
Q |
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| T |
29668722 |
taaaaattaacatattctcaaacattatttatatttctcc----taaggcaaagctaccaaattc-----cagctttgaattaacctcaaattggaggcg |
29668812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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