View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_34 (Length: 321)
Name: NF9893_low_34
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 14597734 - 14597424
Alignment:
| Q |
1 |
ttgtgatcactatatctataattgtaaggcagtacgtgaaggtatgtgcttcatgctggacaaaggtggcgaagacatatgctatattcagttcccccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597734 |
ttgtgatcactatatctataattgtaaggcagtacgtgaaggtatgtgcttcatgctggacaaaggtggcgaagacatatgctatattcagttcccccaa |
14597635 |
T |
|
| Q |
101 |
agatttgaaggtattgatccctcggatcgctatgccaatcacaacactgtattctttgacggaaacatgagagccctcgatggtcttcaaggtccatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597634 |
agatttgaaggtattgatccctcggatcgctatgccaatcacaacactgtattctttgacggaaacatgagagccctcgatggtcttcaaggtccatttt |
14597535 |
T |
|
| Q |
201 |
atgtgggaaccggatgcatgtttaggcggtttgcattgtatggatttgaccctccctcaggtgattgggacacaaaagatcctaaacatgaatgtacgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597534 |
atgtgggaaccggatgcatgtttaggcggtttgcattgtatggatttgaccctccctcaggtgattgggacacaaaagatcctaaacatgaatgtacgga |
14597435 |
T |
|
| Q |
301 |
tgaagtctgtg |
311 |
Q |
| |
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||||||||||| |
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| T |
14597434 |
tgaagtctgtg |
14597424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 14610771 - 14611038
Alignment:
| Q |
1 |
ttgtgatcactatatctataattgtaaggcagtacgtgaaggtatgtgcttcatgctggacaaaggtggcgaagacatatgctatattcagttcccccaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14610771 |
ttgtgatcactatatctataattgcaaggcagtaaaagaaggaatgtgtttcatgatggacaaaggtggcgaagacatatgctatattcagttccctcaa |
14610870 |
T |
|
| Q |
101 |
agatttgaaggtattgatccctcggatcgctatgccaatcacaacactgtattctttgacggaaacatgagagccctcgatggtcttcaaggtccatttt |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||| ||||||||||||| |
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| T |
14610871 |
agatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaaggtccatttt |
14610970 |
T |
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| Q |
201 |
atgtgggaaccggatgcatgtttaggcggtttgcattgtatggatttgaccctccctcaggtgattgg |
268 |
Q |
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||||||||||||| |||||||| ||| | ||||||||||| ||||||||||||||| | ||||||||| |
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| T |
14610971 |
atgtgggaaccgggtgcatgttcaggagatttgcattgtacggatttgaccctcccacgggtgattgg |
14611038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 47919230 - 47919349
Alignment:
| Q |
92 |
ttcccccaaagatttgaaggtattgatccctcggatcgctatgccaatcacaacactgtattctttgacggaaacatgagagccctcgatggtcttcaag |
191 |
Q |
| |
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|||||||| || ||||| |||||||||||||| ||| | ||||| |||||||||||||| |||||||| | |||||||||||||| ||||| ||||||| |
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| T |
47919230 |
ttcccccagaggtttgagggtattgatccctctgatagatatgctaatcacaacactgtcttctttgatgttaacatgagagcccttgatggacttcaag |
47919329 |
T |
|
| Q |
192 |
gtccattttatgtgggaacc |
211 |
Q |
| |
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| || || ||||| |||||| |
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| T |
47919330 |
gcccgttctatgtaggaacc |
47919349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 44634311 - 44634492
Alignment:
| Q |
38 |
gaaggtatgtgcttcatgctggacaaaggtggcgaagacatatgctatattcagttcccccaaagatttgaaggtattgatccctcggatcgctatgcca |
137 |
Q |
| |
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|||||||||||||| ||||| |||| |||||| || ||||| ||| |||| ||||| ||||| |||||||||||||| ||| ||||| ||||| | |
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| T |
44634311 |
gaaggtatgtgctttatgcttgacagaggtggtgacaggatatgttatgttcaattccctcaaaggtttgaaggtattgaccccagtgatcgatatgcaa |
44634410 |
T |
|
| Q |
138 |
atcacaacactgtattctttgacggaaacatgagagccctcgatggtcttcaaggtccattttatgtgggaaccggatgcat |
219 |
Q |
| |
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| |||||||| || |||||||| | | ||||||||| || |||||| | ||||||||| | ||||| ||||| || ||||| |
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| T |
44634411 |
accacaacaccgtgttctttgatgtgagcatgagagctcttgatggtttacaaggtccaatgtatgttggaactggctgcat |
44634492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 255
Target Start/End: Complemental strand, 29918000 - 29917837
Alignment:
| Q |
92 |
ttcccccaaagatttgaaggtattgatccctcggatcgctatgccaatcacaacactgtattctttgacggaaacatgagagccctcgatggtcttcaag |
191 |
Q |
| |
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||||| ||||| ||||| |||||||||||||| ||| | ||||| ||||||||||| || |||||||| | |||||||||||||| ||||| ||||||| |
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| T |
29918000 |
ttccctcaaaggtttgagggtattgatccctctgatagatatgctaatcacaacaccgtcttctttgatgttaacatgagagcccttgatggacttcaag |
29917901 |
T |
|
| Q |
192 |
gtccattttatgtgggaaccggatgcatgtttaggcggtttgcattgtatggatttgaccctcc |
255 |
Q |
| |
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| ||| | ||||| |||||||| || ||||||| ||||||| | ||||| ||||| ||||| |
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| T |
29917900 |
gcccagtctatgtaggaaccggctgtctgtttagaaggtttgctctttatggttttgatcctcc |
29917837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 41490666 - 41490529
Alignment:
| Q |
80 |
tgctatattcagttcccccaaagatttgaaggtattgatccctcggatcgctatgccaatcacaacactgtattctttgacggaaacatgagagccctcg |
179 |
Q |
| |
|
|||||| |||| || ||||||||||||||||| ||||| || || ||||| |||||||||||||||||||| |||||||| | || ||| |||| |||| |
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| T |
41490666 |
tgctatgttcaatttccccaaagatttgaaggaattgacccatcagatcggtatgccaatcacaacactgtcttctttgatgtcaatatgcgagctctcg |
41490567 |
T |
|
| Q |
180 |
atggtcttcaaggtccattttatgtgggaaccggatgc |
217 |
Q |
| |
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||||| |||| ||||| | ||||| || ||||||||| |
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| T |
41490566 |
atggtattcagggtcctgtatatgttggtaccggatgc |
41490529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 15418587 - 15418526
Alignment:
| Q |
101 |
agatttgaaggtattgatccctcggatcgctatgccaatcacaacactgtattctttgacgg |
162 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| |
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|
| T |
15418587 |
agatttgaagggattgatccctcggatcgatatgcaaatcataacacagtcttctttgacgg |
15418526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 15418138 - 15418044
Alignment:
| Q |
161 |
ggaaacatgagagccctcgatggtcttcaaggtccattttatgtgggaaccggatgcatgtttaggcggtttgcattgtatggatttgaccctcc |
255 |
Q |
| |
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||||| |||||||| | |||||||| ||||||||| | ||||| |||||||| |||||||||||| | | |||| | ||||||||||| ||||| |
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| T |
15418138 |
ggaaatatgagagcattggatggtctacaaggtccaatgtatgtcggaaccggttgcatgtttaggagatatgcactctatggatttgaacctcc |
15418044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 217
Target Start/End: Complemental strand, 12193357 - 12193221
Alignment:
| Q |
81 |
gctatattcagttcccccaaagatttgaaggtattgatccctcggatcgctatgccaatcacaacactgtattctttgacggaaacatgagagccctcga |
180 |
Q |
| |
|
||||| |||| || || ||||| |||||||| || || || || ||||| ||||||||||| |||||||| |||||||| | || |||||||| ||||| |
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| T |
12193357 |
gctatgttcaatttcctcaaaggtttgaaggaatcgacccatcagatcggtatgccaatcataacactgtcttctttgatgtcaatatgagagctctcga |
12193258 |
T |
|
| Q |
181 |
tggtcttcaaggtccattttatgtgggaaccggatgc |
217 |
Q |
| |
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|||| |||| ||||| ||||||| || || |||||| |
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|
| T |
12193257 |
tggtattcagggtcctgtttatgttggtactggatgc |
12193221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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