View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_38 (Length: 299)
Name: NF9893_low_38
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 6108960 - 6109077
Alignment:
| Q |
164 |
gatgcaagtacagacagaacatcaaaactcaaacaaaccaagtaaaacaccaaatgtgcaagtatagtgccaatttaacactaccatcaaagttaagaca |
263 |
Q |
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| T |
6108960 |
gatgcaagtacagacagaacatcaaaactcaaacaaaccaagtaaaacaccaaacgtgcaagtatagtgccaatttaacactaacatcaaagttaagaca |
6109059 |
T |
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| Q |
264 |
aaatctgaacaaatcaaa |
281 |
Q |
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||||||||||||| |||| |
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| T |
6109060 |
aaatctgaacaaaacaaa |
6109077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 6108797 - 6108900
Alignment:
| Q |
1 |
aagggtatgaaatccaatatgaaaacttaattggtcaaactcaaactatcaaatttccagtcaaacaatcctttgatttttcaaaacctctcatctgaag |
100 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6108797 |
aagggtatgtgatccaatatgaaaacctaattggtcaaactcaaactatcaaatttccagttaaacaatcctttgatttttcaaaacctctcatctgaag |
6108896 |
T |
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| Q |
101 |
ctat |
104 |
Q |
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|||| |
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| T |
6108897 |
ctat |
6108900 |
T |
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