View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9893_low_39 (Length: 295)
Name: NF9893_low_39
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 44502077 - 44501798
Alignment:
| Q |
1 |
aattattatcaaaatcatgcaggaggataagaagatgaaagtgaagaagggatggcttgcagttcaagtgggtttagaggaagaagaagaaggtggttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44502077 |
aattattatcaaaatcatgcaggaggataagaagatgaaagtgaagaagggatggcttgcagttcaagtgggtttagaggaggaagaagaaggtggttct |
44501978 |
T |
|
| Q |
101 |
tgcgctcagaaatttgtcatacctatctcttatctttaccatccacttttcaagcgtcttctcgaccaagcttatgatgtttatggctaccataccaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44501977 |
tgcgctcagaaatttgtcatacctatctcttatctttaccatccacttttcaagcgtcttctcgaccaagcttatgatgtttatggctaccataccaatg |
44501878 |
T |
|
| Q |
201 |
gtcctctcaagcttccatgttctgtggatgatttccttcatcttcgatggcgaattgagaaagaatctcctaaccaacat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44501877 |
gtcctctcaagcttccatgttctgtggatgatttccttcatcttcgatggcgaattgagaaagaatctcctaaccaacat |
44501798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 39682434 - 39682279
Alignment:
| Q |
112 |
atttgtcatacctatctcttatctttaccatccacttttcaagcgtcttctcgaccaagcttatgatgtttatggctaccataccaatggtcctctcaag |
211 |
Q |
| |
|
|||| |||| ||||| || |||||||| ||||| |||||||| | |||||| || ||||||| || ||||||||||| |||| |||||||||||||| |
|
|
| T |
39682434 |
atttctcatccctatttcatatctttatcatcctcttttcaaccatcttcttgataaagcttacgagatttatggctacaatactgatggtcctctcaag |
39682335 |
T |
|
| Q |
212 |
cttccatgttctgtggatgatttccttcatcttcgatggcgaattgagaaagaatc |
267 |
Q |
| |
|
||||| |||||||| ||||| || ||||| || || ||||||||||| |||||||| |
|
|
| T |
39682334 |
cttccttgttctgttgatgactttcttcacctccgttggcgaattgaaaaagaatc |
39682279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 39682529 - 39682476
Alignment:
| Q |
32 |
aagatgaaagtgaagaagggatggcttgcagttcaagtgggtttagaggaagaa |
85 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
39682529 |
aagatgaaggtgaagaagggatggctagcagttcaagtaggttcagaggaagaa |
39682476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University