View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_low_40 (Length: 292)

Name: NF9893_low_40
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_low_40
NF9893_low_40
[»] chr7 (21 HSPs)
chr7 (117-278)||(26153517-26153685)
chr7 (2-115)||(26152165-26152278)
chr7 (49-163)||(29248949-29249063)
chr7 (52-244)||(44225701-44225892)
chr7 (52-231)||(24503753-24503931)
chr7 (246-292)||(10591355-10591401)
chr7 (246-292)||(37385251-37385297)
chr7 (246-292)||(33050190-33050236)
chr7 (22-121)||(12869238-12869334)
chr7 (246-289)||(27704442-27704485)
chr7 (246-292)||(2347077-2347123)
chr7 (246-292)||(4971297-4971343)
chr7 (246-292)||(28548239-28548285)
chr7 (246-292)||(30864435-30864481)
chr7 (246-292)||(37969938-37969984)
chr7 (246-292)||(40693546-40693592)
chr7 (246-292)||(41910203-41910249)
chr7 (246-292)||(48639401-48639447)
chr7 (183-232)||(23943096-23943145)
chr7 (246-291)||(44511146-44511191)
chr7 (246-278)||(30818029-30818061)
[»] chr8 (19 HSPs)
chr8 (27-232)||(15893089-15893292)
chr8 (44-244)||(24619165-24619364)
chr8 (27-163)||(30944634-30944769)
chr8 (44-136)||(29671092-29671184)
chr8 (246-292)||(40380288-40380334)
chr8 (246-291)||(14531628-14531673)
chr8 (44-153)||(22208811-22208920)
chr8 (246-292)||(3207429-3207475)
chr8 (246-292)||(9314418-9314464)
chr8 (246-292)||(9985696-9985742)
chr8 (246-292)||(14228714-14228760)
chr8 (52-240)||(5075498-5075685)
chr8 (246-292)||(20995076-20995122)
chr8 (246-292)||(35701845-35701891)
chr8 (246-292)||(36497668-36497714)
chr8 (247-292)||(7129541-7129586)
chr8 (84-136)||(6662276-6662328)
chr8 (84-136)||(6742678-6742730)
chr8 (188-244)||(29671227-29671283)
[»] chr5 (20 HSPs)
chr5 (92-244)||(33937007-33937158)
chr5 (71-244)||(26506185-26506357)
chr5 (20-244)||(6374562-6374782)
chr5 (52-244)||(17344169-17344360)
chr5 (52-244)||(35049410-35049601)
chr5 (52-244)||(38739806-38739997)
chr5 (246-292)||(3154661-3154707)
chr5 (52-244)||(20883605-20883796)
chr5 (246-292)||(4820162-4820208)
chr5 (43-153)||(20159769-20159879)
chr5 (42-154)||(20421329-20421441)
chr5 (248-292)||(32379947-32379991)
chr5 (246-292)||(9594485-9594531)
chr5 (246-292)||(9599746-9599792)
chr5 (246-292)||(29765837-29765883)
chr5 (246-292)||(29803232-29803278)
chr5 (246-292)||(30574395-30574441)
chr5 (246-292)||(39032622-39032668)
chr5 (246-291)||(14914379-14914424)
chr5 (246-291)||(18729308-18729353)
[»] chr3 (25 HSPs)
chr3 (48-244)||(27934058-27934249)
chr3 (44-167)||(30531081-30531204)
chr3 (246-292)||(1402657-1402703)
chr3 (246-291)||(34900647-34900692)
chr3 (97-241)||(20514273-20514416)
chr3 (246-292)||(11327115-11327161)
chr3 (246-292)||(19418175-19418221)
chr3 (246-291)||(50280106-50280151)
chr3 (246-292)||(39629856-39629903)
chr3 (246-292)||(41637297-41637344)
chr3 (246-292)||(2280184-2280230)
chr3 (246-292)||(8254034-8254080)
chr3 (246-292)||(14839063-14839109)
chr3 (246-292)||(30400174-30400220)
chr3 (246-292)||(32931936-32931982)
chr3 (246-292)||(36818963-36819009)
chr3 (246-292)||(38944159-38944205)
chr3 (246-292)||(44855258-44855304)
chr3 (246-292)||(50879602-50879648)
chr3 (246-291)||(37134625-37134670)
chr3 (246-279)||(50559243-50559276)
chr3 (246-291)||(54233487-54233532)
chr3 (246-278)||(31366806-31366838)
chr3 (247-279)||(34627913-34627945)
chr3 (246-278)||(50652395-50652427)
[»] chr1 (24 HSPs)
chr1 (21-133)||(38810462-38810573)
chr1 (184-242)||(7318385-7318443)
chr1 (188-244)||(25818532-25818588)
chr1 (246-292)||(16234312-16234358)
chr1 (246-292)||(17167856-17167902)
chr1 (246-292)||(18610780-18610826)
chr1 (246-292)||(34395937-34395983)
chr1 (183-240)||(23943034-23943091)
chr1 (248-292)||(26839391-26839435)
chr1 (188-244)||(30703688-30703744)
chr1 (246-292)||(11947802-11947849)
chr1 (246-284)||(6829809-6829847)
chr1 (246-292)||(7078518-7078564)
chr1 (246-292)||(7371966-7372012)
chr1 (246-292)||(12999840-12999886)
chr1 (246-284)||(26585199-26585237)
chr1 (246-292)||(35972822-35972868)
chr1 (246-292)||(42256467-42256513)
chr1 (246-292)||(46947988-46948034)
chr1 (246-292)||(48872386-48872432)
chr1 (246-292)||(50035555-50035601)
chr1 (188-244)||(12067420-12067476)
chr1 (184-244)||(38810370-38810430)
chr1 (247-283)||(41459767-41459803)
[»] chr4 (24 HSPs)
chr4 (27-163)||(41784613-41784748)
chr4 (43-153)||(54254158-54254268)
chr4 (246-292)||(3475876-3475922)
chr4 (246-292)||(45521597-45521643)
chr4 (44-136)||(21178308-21178400)
chr4 (183-240)||(156735-156792)
chr4 (247-292)||(6126861-6126906)
chr4 (246-291)||(37775446-37775491)
chr4 (248-292)||(8455870-8455914)
chr4 (42-153)||(5317973-5318084)
chr4 (245-292)||(25936246-25936293)
chr4 (246-277)||(52430884-52430915)
chr4 (246-292)||(5208345-5208391)
chr4 (246-284)||(24088590-24088628)
chr4 (246-292)||(24772678-24772724)
chr4 (246-284)||(35017160-35017198)
chr4 (246-292)||(36110141-36110187)
chr4 (246-284)||(41609705-41609743)
chr4 (246-292)||(44272828-44272874)
chr4 (246-292)||(47014946-47014992)
chr4 (190-244)||(50334706-50334760)
chr4 (246-292)||(53662446-53662492)
chr4 (263-292)||(36364803-36364832)
chr4 (246-291)||(42853946-42853991)
[»] chr2 (23 HSPs)
chr2 (99-244)||(35004139-35004283)
chr2 (97-244)||(26224768-26224914)
chr2 (246-292)||(3366415-3366461)
chr2 (246-292)||(43621966-43622012)
chr2 (246-292)||(43791820-43791866)
chr2 (52-244)||(19379446-19379637)
chr2 (44-136)||(41634286-41634377)
chr2 (43-136)||(19507070-19507164)
chr2 (247-279)||(14255310-14255342)
chr2 (192-244)||(28758867-28758919)
chr2 (43-115)||(31101119-31101191)
chr2 (246-292)||(44050022-44050069)
chr2 (246-292)||(5852481-5852527)
chr2 (246-292)||(20974360-20974406)
chr2 (246-284)||(22303210-22303248)
chr2 (246-292)||(29168732-29168778)
chr2 (246-292)||(29893617-29893663)
chr2 (246-292)||(36383469-36383515)
chr2 (246-292)||(36909861-36909907)
chr2 (43-120)||(8756090-8756167)
chr2 (183-244)||(9827313-9827374)
chr2 (246-274)||(36175750-36175778)
chr2 (248-292)||(40371128-40371172)
[»] scaffold0016 (1 HSPs)
scaffold0016 (246-292)||(204463-204509)
[»] chr6 (8 HSPs)
chr6 (246-292)||(3339517-3339563)
chr6 (42-154)||(8356540-8356652)
chr6 (246-292)||(17902710-17902756)
chr6 (246-280)||(27334865-27334899)
chr6 (246-280)||(27395605-27395639)
chr6 (246-292)||(32729896-32729942)
chr6 (247-276)||(29467373-29467402)
chr6 (192-244)||(1031098-1031150)
[»] scaffold0015 (1 HSPs)
scaffold0015 (144-244)||(32931-33030)
[»] scaffold0662 (1 HSPs)
scaffold0662 (246-292)||(1085-1131)
[»] scaffold0002 (1 HSPs)
scaffold0002 (246-292)||(440725-440771)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 117 - 278
Target Start/End: Original strand, 26153517 - 26153685
Alignment:
Q  117 atcatagaacatctcatgtaggagtacatgtgtcatgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaactta 216  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  26153517 atcaaagaatatctcatgtaggagtacatgtgtcatgcatggacttggggg-aggataaagaagatgacttttggaagaccgtatattttccacaactta 26153615  T
Q  217 tcgaagatgatagcgacattgattacata--------gatatttgtacaactattttatgacaacttttg 278  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  26153616 tcgaagatgatagcgacattgattacatatgagaaatgatatttgtacaactattttatgacaacttttg 26153685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 26152165 - 26152278
Alignment:
Q  2 gatcatgttcgataagccgcgtgaaaaagaaaattaaagtcttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatacttta 101  Q
    |||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||||| ||     
T  26152165 gatcatgttcaatgagccgcgtgaaaaagaagattaaagtcttttttaacccccactgacaagctagacgagtttaagacacaatttaagagataccttt 26152264  T
Q  102 tccatattggtgaa 115  Q
    ||||||||||||||    
T  26152265 tccatattggtgaa 26152278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 29249063 - 29248949
Alignment:
Q  49 aacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtg 148  Q
    |||||||| ||||||| | |||||||| ||| || |||| |||| ||||||| || ||||||||||| |||| ||||||||||||||||||| | |||||    
T  29249063 aacccccatcgacaagttggacgagttgaaggcacaactcaacaaatactttgtcgatattggtgaaaatcaaagaacatctcatgtaggagcatatgtg 29248964  T
Q  149 tcatgcatggacttg 163  Q
     ||||  ||||||||    
T  29248963 ccatgtgtggacttg 29248949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 44225701 - 44225892
Alignment:
Q  52 ccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtca 151  Q
    ||||||||||||| | |||||||| ||| || ||||| ||   | ||||||||||||||||  | |||| ||||||| | |||||| |||||| ||  ||    
T  44225701 ccccaccgacaagttggacgagttgaaggcaaaacttgacgacttctttatccatattggttcaaatcacagaacatattatgtagtagtacaagttcca 44225800  T
Q  152 tgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
     || |||||||||||| | ||||  ||||  |||  |||||||||||| ||||||||||||||  || |||||||||| ||| ||||||||||    
T  44225801 ggcgtggacttggggg-aggataaggaagaggaccgttggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacat 44225892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 231
Target Start/End: Original strand, 24503753 - 24503931
Alignment:
Q  52 ccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtca 151  Q
    ||||||||||||| | |||| ||| |||| | ||||| ||   | ||||||||||||||||  | |||| ||||||| | |||||  |||| ||||| ||    
T  24503753 ccccaccgacaagttggacgtgttgaagagaaaacttgacgacttctttatccatattggttcaaatcaaagaacatgtgatgtaatagtagatgtgcca 24503852  T
Q  152 tgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcg 231  Q
     || |||||||||||| | ||||  ||||  || ||||| |||||||| ||||||||||||||| || ||||||||||||    
T  24503853 agcgtggacttggggg-aggataaggaagaggaattttgaaagaccgtatattttccacaacttctcaaagatgatagcg 24503931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 10591401 - 10591355
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||    
T  10591401 gatatttgtacatctattttatgacaactttagtacaaccttctctc 10591355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 37385297 - 37385251
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||    
T  37385297 gatatttgtacaactattttttgacaacttttgtacaactttctctc 37385251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 33050190 - 33050236
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||||    
T  33050190 gatatttgtacaaccattttgtgacaacttttgtacaactttctctc 33050236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 12869238 - 12869334
Alignment:
Q  22 gtgaaaaagaaaattaaagtcttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcat 121  Q
    ||||||||||| |||||  ||||||| |  ||||||||||||  | |||||||| ||||||  |||||||||||| |||||||||| ||||||| |||||    
T  12869238 gtgaaaaagaagattaatctctttttaa--ccccaccgacaaa-tggacgagttgaagacacgacttaacagatattttatccatactggtgaaaatcat 12869334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 27704442 - 27704485
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttct 289  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  27704442 gatatttgtacaactatttttgtacaacttttgtacaaccttct 27704485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 2347123 - 2347077
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| |||||||||| ||||||| |||||||    
T  2347123 gatatttgtacaaccattttgtgacaactttggtacaactttctctc 2347077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 4971297 - 4971343
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| ||||||||||| |||||| |||||||    
T  4971297 gatatttgtacaaccattttgtgacaacttttatacaactttctctc 4971343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 28548285 - 28548239
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    ||||||||||||||||||||   |||||||||||||||| |||||||    
T  28548285 gatatttgtacaactattttggtacaacttttgtacaactttctctc 28548239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 30864481 - 30864435
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| | ||| |||||||||||||||||| |||||||    
T  30864481 gatatttgtacaaccaatttgtgacaacttttgtacaactttctctc 30864435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 37969938 - 37969984
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    ||||||||||||||||||||   |||||||||||||||| |||||||    
T  37969938 gatatttgtacaactattttgatacaacttttgtacaactttctctc 37969984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 40693592 - 40693546
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||| |||||||||||  ||||| |||||||    
T  40693592 gatatttgtacaactattttttgacaacttttagacaactttctctc 40693546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 41910249 - 41910203
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| |||||   ||||||||||||||||||||||||    
T  41910249 gatatttgtacaaccatttttgtacaacttttgtacaaccttctctc 41910203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 48639447 - 48639401
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| |||||   ||||||||||||||||||||||||    
T  48639447 gatatttgtacaaccatttttgtacaacttttgtacaaccttctctc 48639401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 23943096 - 23943145
Alignment:
Q  183 gacttttggaagaccgtttattttccacaacttatcgaagatgatagcga 232  Q
    ||||| ||||||||||| |||| |||||||||| || |||||||||||||    
T  23943096 gacttctggaagaccgtgtattatccacaacttctcaaagatgatagcga 23943145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 44511146 - 44511191
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctct 291  Q
    |||||| ||||||| ||||| |||||||||||||||||| ||||||    
T  44511146 gatattcgtacaaccattttgtgacaacttttgtacaactttctct 44511191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 30818061 - 30818029
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttg 278  Q
    |||||||||||||| ||||||||||||||||||    
T  30818061 gatatttgtacaaccattttatgacaacttttg 30818029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 15893292 - 15893089
Alignment:
Q  27 aaagaaaattaaagtcttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaac 126  Q
    |||||| ||||| |||||||| |||| ||||||||||| | |||||||| ||| || |||||||| | ||||||||||||| ||||||| |||| |||||    
T  15893292 aaagaagattaaggtcttttt-aacctccaccgacaagttggacgagttgaaggcacaacttaacggctactttatccatagtggtgaaaatcaaagaac 15893194  T
Q  127 atctcatgtaggagtacatgtgtcatgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatga 226  Q
    ||||||||||  |||||||| | ||||| |||||||| ||||| ||||  |||| |||||||||||||||||| ||||||||||||||| || |||||||    
T  15893193 atctcatgtaatagtacatgcgccatgcgtggacttg-ggggaggataaggaagatgacttttggaagaccgtgtattttccacaacttgtcaaagatga 15893095  T
Q  227 tagcga 232  Q
    ||||||    
T  15893094 tagcga 15893089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 244
Target Start/End: Complemental strand, 24619364 - 24619165
Alignment:
Q  44 tttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtac 143  Q
    |||||||||||| | |||||| | ||| |||| ||| || || ||||| ||||||||||| ||||||||||| |||| ||||||||||||||    ||||    
T  24619364 tttttaacccccgctgacaagttggacaagttgaaggcacaagttaactgatactttatcgatattggtgaaaatcaaagaacatctcatgtcattgtac 24619265  T
Q  144 atgtgtcatgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattaca 243  Q
    | ||||||||||||||||| |||||| ||||  ||||  |||||||| |||| ||| |||| |||||||||| || |||||||||| ||| |||||||||    
T  24619264 aggtgtcatgcatggactt-gggggaggataaggaagaggacttttgaaagatcgtgtattatccacaacttttcaaagatgatagtgacgttgattaca 24619166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 30944634 - 30944769
Alignment:
Q  27 aaagaaaattaaagtcttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaac 126  Q
    |||||| ||||| ||||||| ||||||||| ||||||| | |||||||| ||| || |||| |||| ||||||| || ||||||||||| |||| |||||    
T  30944634 aaagaagattaaggtctttt-taacccccatcgacaagttggacgagttgaaggcacaactcaacaaatactttgtcgatattggtgaaaatcaaagaac 30944732  T
Q  127 atctcatgtaggagtacatgtgtcatgcatggacttg 163  Q
    |||||||||||||| | ||||| ||||  ||||||||    
T  30944733 atctcatgtaggagcatatgtgccatgtgtggacttg 30944769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 29671092 - 29671184
Alignment:
Q  44 tttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgta 136  Q
    |||||| ||||||| |||||| | |||||||| | | || ||||||| ||||||||| |||||||||||||| |||| |||||||||||||||    
T  29671092 tttttaccccccactgacaagttggacgagttgatggcacaacttaatagatactttgtccatattggtgaaaatcaaagaacatctcatgta 29671184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 40380288 - 40380334
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||    
T  40380288 gatatttgtacatctattttatgacaacttttgtacaactttctctc 40380334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 14531628 - 14531673
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctct 291  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
T  14531628 gatatttgtacaactattttatgataacttttgtacaactttctct 14531673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 22208811 - 22208920
Alignment:
Q  44 tttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtac 143  Q
    ||||||||||||||| ||||| | ||  |||| ||| || ||||||||| ||||||| ||||| || ||||| |||| ||||||||||||||    ||||    
T  22208811 tttttaacccccaccaacaagttggataagttgaaggcacaacttaacaaatactttgtccatcttagtgaaaatcaaagaacatctcatgtgtttgtac 22208910  T
Q  144 atgtgtcatg 153  Q
    ||||||||||    
T  22208911 atgtgtcatg 22208920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 3207475 - 3207429
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||||    
T  3207475 gatatttgtacatccattttatgacaccttttgtacaaccttctctc 3207429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 9314418 - 9314464
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| | |||||||||||| |||||||||||||||||||    
T  9314418 gatatttgtacatccattttatgacaatttttgtacaaccttctctc 9314464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 9985742 - 9985696
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| ||||||||||||||||||| |||||| |||||||    
T  9985742 gatatttgtacatctattttatgacaacttttatacaacattctctc 9985696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 14228714 - 14228760
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||    
T  14228714 gatatttgtacaactattttgtgataacttttgtacaactttctctc 14228760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 240
Target Start/End: Original strand, 5075498 - 5075685
Alignment:
Q  52 ccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtca 151  Q
    |||||| |||||| | |||||||| ||| || ||||| |  | | ||||||||| ||||||  | |||||||||||  || |||   |||| ||||||||    
T  5075498 ccccacggacaagttggacgagttgaaggcaaaacttgatggcttctttatccaaattggttcaaatcatagaacacatcttgtcatagtaaatgtgtca 5075597  T
Q  152 tgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgatt 240  Q
     || | |||||||||| | || |  |||| |||||| ||||| ||||| |||| |||||||||| || |||||||||||||| ||||||    
T  5075598 ggcctagacttggggg-aggagaaggaagatgacttctggaaaaccgtgtattatccacaacttctcaaagatgatagcgacgttgatt 5075685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 20995122 - 20995076
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    ||||||| |||| | |||||||||||| |||||||||||||||||||    
T  20995122 gatatttatacatccattttatgacaatttttgtacaaccttctctc 20995076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 35701891 - 35701845
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| |||||   ||||||||||||||||||||||||    
T  35701891 gatatttgtacaaccatttttgtacaacttttgtacaaccttctctc 35701845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 36497668 - 36497714
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||| |||||||||||  ||||| |||||||    
T  36497668 gatatttgtacaactattttgtgacaacttttagacaactttctctc 36497714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 7129541 - 7129586
Alignment:
Q  247 atatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    ||||||||||||| ||||| |||||||||||| ||||| |||||||    
T  7129541 atatttgtacaaccattttgtgacaacttttggacaactttctctc 7129586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 6662328 - 6662276
Alignment:
Q  84 aacttaacagatactttatccatattggtgaacatcatagaacatctcatgta 136  Q
    ||||||||| ||||||| ||||| |||||||| ||||||  ||||||||||||    
T  6662328 aacttaacaaatactttgtccatcttggtgaaaatcatactacatctcatgta 6662276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 6742730 - 6742678
Alignment:
Q  84 aacttaacagatactttatccatattggtgaacatcatagaacatctcatgta 136  Q
    ||||||||| ||||||| ||||| |||||||| ||||||  ||||||||||||    
T  6742730 aacttaacaaatactttgtccatcttggtgaaaatcatactacatctcatgta 6742678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 29671227 - 29671283
Alignment:
Q  188 ttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||||||||||| |||||||||||| ||||| | |||||| || |||| ||||||||    
T  29671227 ttggaagaccgtgtattttccacaagttatccatgatgatggcaacatcgattacat 29671283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 92 - 244
Target Start/End: Original strand, 33937007 - 33937158
Alignment:
Q  92 agatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtcatgcatggacttggggggatgatagagaaggtgacttttgg 191  Q
    |||||||||||||||||||||||  |||| |||||||||||||||| |||||||||||||  | ||||||| | |||| |||| |||||  |||||||||    
T  33937007 agatactttatccatattggtgacaatcaaagaacatctcatgtagtagtacatgtgtcaaacgtggactt-gagggaggataaagaagaggacttttgg 33937105  T
Q  192 aagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||||  | ||||||||||||||||||||| ||||||| ||||||||||||||    
T  33937106 aagacgatatattttccacaacttatcgaaaatgatagtgacattgattacat 33937158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 26506357 - 26506185
Alignment:
Q  71 gagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtcatgcatggacttggggggat 170  Q
    ||||| ||| || ||||| |||||| ||||||||||||||||  | |||| ||||||| | || ||  |||| |||||||| ||||||||||| ||| |     
T  26506357 gagttaaaggcaaaacttgacagatgctttatccatattggttcaaatcaaagaacatgtgatataatagtaaatgtgtcaggcatggacttgaggg-ag 26506259  T
Q  171 gatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||| |||||   ||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||    
T  26506258 gataaagaagagcacttttgaaagaccgtgtattttccacaacttgtcgaagatgatagcgacgttgcttacat 26506185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 6374562 - 6374782
Alignment:
Q  20 gcgtgaaaaagaaaattaaagtcttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatc 119  Q
    |||||| |||||| ||||| |||||||| ||||||||| |||||| | |||||||| ||| || |  |||||| ||||||||||||||||  |||| |||    
T  6374562 gcgtgagaaagaagattaaggtcttttt-aacccccactgacaagttggacgagttgaaggcacat-ttaacaaatactttatccatattcatgaaaatc 6374659  T
Q  120 atagaacatctcatgtaggagtacatgtgtcatgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcg 219  Q
    | |||| ||||||||||  || | | |||| |||| ||||||| |||||| ||||  |||   || |||| ||||||||| |||| |||||||||| ||     
T  6374660 aaagaatatctcatgtaacag-agaggtgttatgcgtggactt-gggggaggataaggaataggattttttgaagaccgtatattatccacaacttgtca 6374757  T
Q  220 aagatgatagcgacattgattacat 244  Q
    ||||||| |||||| ||||||||||    
T  6374758 aagatgacagcgacgttgattacat 6374782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 17344169 - 17344360
Alignment:
Q  52 ccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtca 151  Q
    ||||||||| ||| | |||||||| ||| || ||||| ||   | ||||||||||||||||  | |||| ||||||| | |||||  |||| || || ||    
T  17344169 ccccaccgagaagttggacgagttgaaggcaaaacttgacgacttctttatccatattggttcaaatcaaagaacatgtgatgtaatagtaaatatgcca 17344268  T
Q  152 tgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
     || |||||||||||| | ||||  ||||   ||||||| |||||||| ||||||||||||||| |||||||||||| ||||  |||||||||    
T  17344269 agcgtggacttggggg-aggataaggaagagaacttttgaaagaccgtgtattttccacaacttgtcgaagatgataccgacgctgattacat 17344360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 244
Target Start/End: Complemental strand, 35049601 - 35049410
Alignment:
Q  52 ccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtca 151  Q
    ||||||||||||| | |||||||| |||||| ||||| ||   | ||||||||||||||||  | |||| ||||||| | |||||| |||||| ||  ||    
T  35049601 ccccaccgacaagttggacgagttgaagacaaaacttgacgacttctttatccatattggttcaaatcacagaacatattatgtagtagtacaagttcca 35049502  T
Q  152 tgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
     || |||||||| ||| | ||||  ||||  |||  |||||||||||  ||||||||||||||  || |||||||||| ||| ||||||||||    
T  35049501 ggcgtggacttgtggg-aggataaggaagaggaccgttggaagaccgcgtattttccacaactagtcaaagatgatagtgacgttgattacat 35049410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 38739806 - 38739997
Alignment:
Q  52 ccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtca 151  Q
    |||||| |||||| | |||||||| ||| || ||||| ||   | ||||||||||||||||  | |||| ||||||| | |||||| |||||| ||  ||    
T  38739806 ccccactgacaagttggacgagttgaaggcaaaacttgacgacttctttatccatattggttcaaatcacagaacatattatgtagtagtacaagttcca 38739905  T
Q  152 tgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
     || |||||||||||| | ||||  ||||  |||  |||||||||||| ||||||||||||||  || |||||||||| ||| ||||||||||    
T  38739906 ggcgtggacttggggg-aggataaggaagaggaccgttggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacat 38739997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 3154707 - 3154661
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||    
T  3154707 gatatttgtacaactattttatgataacttttgtacaactttctctc 3154661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 244
Target Start/End: Complemental strand, 20883796 - 20883605
Alignment:
Q  52 ccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtca 151  Q
    ||||||||||||| | |||||||| ||| || ||||| ||   | |||||||  |||||||  | |||| | ||||| | |||||| |||||| || |||    
T  20883796 ccccaccgacaagttggacgagttgaaggcaaaacttgacgacttctttatcagtattggttcaaatcacataacatattatgtagtagtacaagtttca 20883697  T
Q  152 tgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
     || |||||||||||| | ||||  ||||  |||  |||||||||||| ||||||||||||||  || |||||||||| ||| ||||||||||    
T  20883696 ggcgtggacttggggg-aggataaggaagaggaccgttggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacat 20883605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 4820162 - 4820208
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||||    
T  4820162 gatatttgtacatccattttatgacatcttttgtacaaccttctctc 4820208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 20159879 - 20159769
Alignment:
Q  43 ttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagta 142  Q
    |||||||||||||||  ||||  | || ||||| |||||| ||||| |||||||||||  |||| |||||||| |||| ||| |||||||||||   |||    
T  20159879 ttttttaacccccactaacaaattggatgagttgaagacacaacttgacagatacttttcccatcttggtgaaaatcaaagagcatctcatgtatttgta 20159780  T
Q  143 catgtgtcatg 153  Q
    || ||||||||    
T  20159779 caggtgtcatg 20159769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 20421329 - 20421441
Alignment:
Q  42 cttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagt 141  Q
    |||||||||||| ||| |||||  | || ||||| ||| || |||||| || ||||||| | ||| |||||||| |||| |||||||||||||||   ||    
T  20421329 cttttttaacccacactgacaatttcgatgagttgaaggcacaacttagcaaatactttgtacatcttggtgaaaatcaaagaacatctcatgtattcgt 20421428  T
Q  142 acatgtgtcatgc 154  Q
    ||| |||||||||    
T  20421429 acaagtgtcatgc 20421441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 32379991 - 32379947
Alignment:
Q  248 tatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||    
T  32379991 tatttgtacaactagtttatgacaacttttgaacaactttctctc 32379947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 9594485 - 9594531
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| | ||| |||||||||||||||||| |||||||    
T  9594485 gatatttgtacaaccaatttgtgacaacttttgtacaactttctctc 9594531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 9599792 - 9599746
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| | ||| |||||||||||||||||| |||||||    
T  9599792 gatatttgtacaaccaatttgtgacaacttttgtacaactttctctc 9599746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 29765837 - 29765883
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||||  |||||||||||||||| |||||||    
T  29765837 gatatttgtacaaccattttagtacaacttttgtacaactttctctc 29765883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 29803232 - 29803278
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||| |||||||||||  ||||| |||||||    
T  29803232 gatatttgtacaactattttttgacaacttttaaacaactttctctc 29803278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 30574441 - 30574395
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| | ||| |||||||||||||||||| |||||||    
T  30574441 gatatttgtacaaccaatttgtgacaacttttgtacaactttctctc 30574395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 39032668 - 39032622
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| |||||   ||||||||||||||||||||||||    
T  39032668 gatatttgtacaaccatttttgtacaacttttgtacaaccttctctc 39032622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 14914379 - 14914424
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctct 291  Q
    |||||||||||||| ||||| |||||||||||| ||||| ||||||    
T  14914379 gatatttgtacaaccattttgtgacaacttttggacaactttctct 14914424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 18729353 - 18729308
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctct 291  Q
    |||||||||||||| |||||   |||||||||||||||||||||||    
T  18729353 gatatttgtacaaccatttttgtacaacttttgtacaaccttctct 18729308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 27934058 - 27934249
Alignment:
Q  48 taacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgt 147  Q
    |||||| |||||||||| | |||||||| ||| || ||||| || |||||||||||||| |||||| | |||| ||||||||| |||||| |||| ||||    
T  27934058 taaccctcaccgacaagttcgacgagttgaaggcacaacttgacggatactttatccatgttggtgcaaatcaaagaacatctgatgtagtagtaaatgt 27934157  T
Q  148 gtcatgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||| || || |||||||     ||||  |||   ||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||| ||||||    
T  27934158 gtcaggcgtgaacttggg-----gataaggaaaaggacttttggaagaccatatattttccacaacttgtcgaagatgatagcgacgttgcttacat 27934249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 30531081 - 30531204
Alignment:
Q  44 tttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtac 143  Q
    |||||||| |||||||||||| | || ||||| ||| || |||||||||  || ||||||||||||| |||| |||| |||||||||||||||  |||||    
T  30531081 tttttaactcccaccgacaagttggatgagttgaaggcacaacttaacaactattttatccatattgatgaaaatcaaagaacatctcatgtaatagtac 30531180  T
Q  144 atgtgtcatgcatggacttggggg 167  Q
    | ||| ||||| ||||||||||||    
T  30531181 aagtgccatgcgtggacttggggg 30531204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 1402657 - 1402703
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||    
T  1402657 gatatttgtacatccattttatgacaacttttgtacaaccttctctc 1402703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 34900647 - 34900692
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctct 291  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||    
T  34900647 gataattgtacatctattttatgacaacttttgtacaaccttctct 34900692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 20514416 - 20514273
Alignment:
Q  97 ctttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtcatgcatggacttggggggatgatagagaaggtgacttttggaagac 196  Q
    ||||||||||||||||  | |||| ||||||| | |||||| |||||| ||  || || |||||||||||| | ||||  ||||  |||  |||||||||    
T  20514416 ctttatccatattggttcaaatcacagaacatattatgtagtagtacaagtaccaggcgtggacttggggg-aggataatgaagaggaccgttggaagac 20514318  T
Q  197 cgtttattttccacaacttatcgaagatgatagcgacattgatta 241  Q
    ||| | ||||||||||||  || |||||||||||||| |||||||    
T  20514317 cgtgttttttccacaactagtcaaagatgatagcgacgttgatta 20514273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 11327115 - 11327161
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||||    
T  11327115 gatatttgtacaaccattttgtgacaacttttgtacaactttctctc 11327161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 19418221 - 19418175
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| |||||||||||||||||  |||||||||||||    
T  19418221 gatatttgtacaaccattttatgacaactttttgacaaccttctctc 19418175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 50280151 - 50280106
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctct 291  Q
    |||||||||||||| ||| |||||||||||||||||||| ||||||    
T  50280151 gatatttgtacaaccattctatgacaacttttgtacaactttctct 50280106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 39629903 - 39629856
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgt-acaaccttctctc 292  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||    
T  39629903 gatatttgtacaactatttttttacaacttttgtgacaaccttctctc 39629856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 41637344 - 41637297
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgt-acaaccttctctc 292  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  41637344 gatatttgtacaactattttttgacaacttttgtgacaactttctctc 41637297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 2280184 - 2280230
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||||  |||||||||||||||| |||||||    
T  2280184 gatatttgtacaaccattttagtacaacttttgtacaactttctctc 2280230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 8254034 - 8254080
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| |||||||||| ||||||| |||||||    
T  8254034 gatatttgtacaaccattttgtgacaactttggtacaactttctctc 8254080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 14839109 - 14839063
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| |||||   ||||||||||||||||||||||||    
T  14839109 gatatttgtacaaccatttttgtacaacttttgtacaaccttctctc 14839063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 30400220 - 30400174
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| | ||| |||||||||||||||||| |||||||    
T  30400220 gatatttgtacaacaaatttgtgacaacttttgtacaactttctctc 30400174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 32931982 - 32931936
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| | ||| |||||||||||||||||| |||||||    
T  32931982 gatatttgtacaaccaatttgtgacaacttttgtacaactttctctc 32931936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 36818963 - 36819009
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| | ||| |||||||||||||||||| |||||||    
T  36818963 gatatttgtacaaccaatttgtgacaacttttgtacaactttctctc 36819009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 38944205 - 38944159
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||| ||| |||||||||||||||||  |||||||    
T  38944205 gatatttgtacaactaatttgtgacaacttttgtacaattttctctc 38944159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 44855258 - 44855304
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||| ||||||||| |||||||||||||| ||| |||||||    
T  44855258 gatatttgtataactattttgtgacaacttttgtataactttctctc 44855304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 50879602 - 50879648
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    ||||||||||||||||  || |||||||||||||||||| |||||||    
T  50879602 gatatttgtacaactaaattgtgacaacttttgtacaactttctctc 50879648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 37134670 - 37134625
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctct 291  Q
    ||||||||||||||||||||||||||| ||||  ||||| ||||||    
T  37134670 gatatttgtacaactattttatgacaattttttaacaactttctct 37134625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 50559276 - 50559243
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgt 279  Q
    |||||||||||||||||||| |||||||||||||    
T  50559276 gatatttgtacaactattttttgacaacttttgt 50559243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 54233532 - 54233487
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctct 291  Q
    |||||||||||||| ||||| | |||||||||||||||| ||||||    
T  54233532 gatatttgtacaaccatttttttacaacttttgtacaactttctct 54233487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 31366838 - 31366806
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttg 278  Q
    |||||||||||||||||||||||||||| ||||    
T  31366838 gatatttgtacaactattttatgacaacgtttg 31366806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 34627945 - 34627913
Alignment:
Q  247 atatttgtacaactattttatgacaacttttgt 279  Q
    ||||||||||||||||||| |||||||||||||    
T  34627945 atatttgtacaactattttttgacaacttttgt 34627913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 50652395 - 50652427
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttg 278  Q
    |||||||||||||| ||||||||||||||||||    
T  50652395 gatatttgtacaaccattttatgacaacttttg 50652427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 38810573 - 38810462
Alignment:
Q  21 cgtgaaaaagaaaattaaagtcttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatca 120  Q
    |||||||||||| ||||| |||||||| |||||||||||||||| | |||||||| ||  || ||||||||| |||||||||||||||||||||| ||||    
T  38810573 cgtgaaaaagaatattaaggtcttttt-aacccccaccgacaaggttgacgagttgaaagcacaacttaacatatactttatccatattggtgaaaatca 38810475  T
Q  121 tagaacatctcat 133  Q
     ||||||||||||    
T  38810474 aagaacatctcat 38810462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 7318443 - 7318385
Alignment:
Q  184 acttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattac 242  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||||||| ||| ||||    
T  7318443 acttttggaagactgtgtattttccacaacttctcgaagatgatagcgacgttgcttac 7318385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 25818532 - 25818588
Alignment:
Q  188 ttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||||||||||| ||||||||||||||  || |||||||||||||| ||||||||||    
T  25818532 ttggaagaccgtgtattttccacaactagtcaaagatgatagcgacgttgattacat 25818588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 16234358 - 16234312
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||    
T  16234358 gatatttgtacatccattttatgacaacttttgtataaccttctctc 16234312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 17167856 - 17167902
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||    
T  17167856 gatatttgtacatccattttatgacaacttttatacaaccttctctc 17167902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 18610780 - 18610826
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||| ||||||||||| |||||| |||||||    
T  18610780 gatatttgtacaactattttgtgacaacttttttacaactttctctc 18610826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 34395983 - 34395937
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  34395983 gatatttgtacatctattttatgacaacttttgaacaactttctctc 34395937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 23943034 - 23943091
Alignment:
Q  183 gacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgatt 240  Q
    ||||| ||||||||||| |||| |||||||||| || |||||||||||||| ||||||    
T  23943034 gacttctggaagaccgtgtattatccacaacttctcaaagatgatagcgacgttgatt 23943091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 26839391 - 26839435
Alignment:
Q  248 tatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||    
T  26839391 tatttgtacaaccattttatgataacttttgtacaactttctctc 26839435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 30703744 - 30703688
Alignment:
Q  188 ttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||||||||||| ||||||||||||||  || |||||||||| ||| ||||||||||    
T  30703744 ttggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacat 30703688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 11947802 - 11947849
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgt-acaaccttctctc 292  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  11947802 gatatttgtacaaccattttatgacaacttttgtgacaactttctctc 11947849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 6829847 - 6829809
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaac 284  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  6829847 gatatttgtacaactaatttgtgacaacttttgtacaac 6829809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 7078564 - 7078518
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| ||||||| |||||||||||| ||||| |||||||    
T  7078564 gatatttgtacatctattttgtgacaacttttgaacaactttctctc 7078518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 7372012 - 7371966
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||| |||||||||| ||||||||||  |||||||    
T  7372012 gatatttgtacaactaatttatgacaatttttgtacaattttctctc 7371966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 12999886 - 12999840
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| | |||||||||||||||| |||||||    
T  12999886 gatatttgtacaaccattttctaacaacttttgtacaactttctctc 12999840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 26585237 - 26585199
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaac 284  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  26585237 gatatttgtacaactattttgtgataacttttgtacaac 26585199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 35972868 - 35972822
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    ||||||||| |||| ||||| |||||||||||||||||| |||||||    
T  35972868 gatatttgttcaaccattttgtgacaacttttgtacaactttctctc 35972822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 42256467 - 42256513
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| |||||||||| ||||||| |||||||    
T  42256467 gatatttgtacaaccattttgtgacaactttggtacaactttctctc 42256513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 46947988 - 46948034
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| | |||||||||||||||||  |||||||||||||    
T  46947988 gatatttgtacatccattttatgacaactttttgacaaccttctctc 46948034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 48872386 - 48872432
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| | |||||||||||||||  |||||||||||||    
T  48872386 gatatttgtacaaccactttatgacaacttttagacaaccttctctc 48872432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 50035601 - 50035555
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| ||||||||||| |||||| |||||||    
T  50035601 gatatttgtacaaccattttgtgacaacttttatacaactttctctc 50035555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 12067420 - 12067476
Alignment:
Q  188 ttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||||||||||| ||||||||||||||  || ||||| |||| ||| ||||||||||    
T  12067420 ttggaagaccgtgtattttccacaactagtcaaagataatagtgacgttgattacat 12067476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 38810430 - 38810370
Alignment:
Q  184 acttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||||| ||||||||| ||||||||| ||| |||| || | |||||| |||||||||||||    
T  38810430 acttttagaagaccgtgtattttccataacgtatcaaaaacgatagcaacattgattacat 38810370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 41459803 - 41459767
Alignment:
Q  247 atatttgtacaactattttatgacaacttttgtacaa 283  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  41459803 atatttgttcaactattttatgacaacttttgaacaa 41459767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 41784613 - 41784748
Alignment:
Q  27 aaagaaaattaaagtcttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaac 126  Q
    |||||| ||||| ||||||| ||||||||||||||||| | |||||||| ||| || |||| |||| ||||||| || ||||||||||| |||| |||||    
T  41784613 aaagaagattaaggtctttt-taacccccaccgacaagttggacgagttgaaggcacaactcaacaaatactttgtcgatattggtgaaaatcaaagaac 41784711  T
Q  127 atctcatgtaggagtacatgtgtcatgcatggacttg 163  Q
    ||||||||||| || | ||||| ||||  ||||||||    
T  41784712 atctcatgtagaagcatatgtgccatgagtggacttg 41784748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 153
Target Start/End: Original strand, 54254158 - 54254268
Alignment:
Q  43 ttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagta 142  Q
    ||||||||||||||||||| || |  | ||||| |||||| ||||||||| ||| ||||||||| || ||||| |||| | |||||||||||||   |||    
T  54254158 ttttttaacccccaccgacgagttgcatgagttgaagacacaacttaacaaatattttatccatcttagtgaagatcaaataacatctcatgtatttgta 54254257  T
Q  143 catgtgtcatg 153  Q
    |||||||||||    
T  54254258 catgtgtcatg 54254268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 3475876 - 3475922
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  3475876 gatatttgtacaaccattttatgacaacttttgtacaactttctctc 3475922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 45521643 - 45521597
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||    
T  45521643 gatatttgtacatccattttatgacaacttttgtacaaccttctctc 45521597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 21178308 - 21178400
Alignment:
Q  44 tttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgta 136  Q
    ||||| ||||| | ||||||| | || ||||| ||| || ||||||||||||| ||| ||||| |||||||| |||| |||||||||||||||    
T  21178308 tttttgacccctatcgacaagttggatgagttaaaggcacaacttaacagatattttgtccatcttggtgaaaatcaaagaacatctcatgta 21178400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 156792 - 156735
Alignment:
Q  183 gacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgatt 240  Q
    ||||| ||||||||||| |||| |||||||||| || |||||||||||||| ||||||    
T  156792 gacttctggaagaccgtgtattatccacaacttctcaaagatgatagcgacgttgatt 156735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 6126861 - 6126906
Alignment:
Q  247 atatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||    
T  6126861 atatttgtacatctattttatgacaatttttgtacaacattctctc 6126906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 37775491 - 37775446
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctct 291  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||||    
T  37775491 gatatttctacaactattttattacaacttttgtacaactttctct 37775446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 8455870 - 8455914
Alignment:
Q  248 tatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||| |||||||||||| ||||| |||||||    
T  8455870 tatttgtacaactattttgtgacaacttttgaacaactttctctc 8455914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 5317973 - 5318084
Alignment:
Q  42 cttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagt 141  Q
    ||||||||||| ||||||| ||  | || ||||| ||| || ||||||||||||| ||| ||||| |||| ||| |||| |||| ||||||||||   ||    
T  5317973 cttttttaacctccaccgaaaatttggatgagttgaaggcacaacttaacagataatttgtccatcttggcgaaaatcaaagaatatctcatgtatttgt 5318072  T
Q  142 acatgtgtcatg 153  Q
    ||| ||||||||    
T  5318073 acaagtgtcatg 5318084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 25936246 - 25936293
Alignment:
Q  245 agatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||| |||||||||||| |||||||||||| ||||| |||||||    
T  25936246 agatatttatacaactattttttgacaacttttgcacaactttctctc 25936293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 52430884 - 52430915
Alignment:
Q  246 gatatttgtacaactattttatgacaactttt 277  Q
    ||||||||||||||||||||||||||||||||    
T  52430884 gatatttgtacaactattttatgacaactttt 52430915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 5208391 - 5208345
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| | ||| |||||||||||||||||| |||||||    
T  5208391 gatatttgtacaaccaatttgtgacaacttttgtacaactttctctc 5208345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 24088628 - 24088590
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaac 284  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  24088628 gatatttgtacaaccattttatgacaacttttgaacaac 24088590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 24772678 - 24772724
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| | |||||||||||||||||  |||||||||||||    
T  24772678 gatatttgtacatccattttatgacaactttttgacaaccttctctc 24772724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 35017160 - 35017198
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaac 284  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  35017160 gatatttgtacaactattttgtgacaacttttttacaac 35017198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 36110141 - 36110187
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    ||||||||||||||||||||   |||| |||||||||||||||||||    
T  36110141 gatatttgtacaactatttttgtacaatttttgtacaaccttctctc 36110187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 41609743 - 41609705
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaac 284  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  41609743 gatatttgtacatccattttatgacaacttttgtacaac 41609705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 44272874 - 44272828
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||| |||||||||||  ||||| |||||||    
T  44272874 gatatttgtacaactattttttgacaacttttaaacaactttctctc 44272828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 47014946 - 47014992
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||| |||||||||||  ||||| |||||||    
T  47014946 gatatttgtacaactattttgtgacaacttttaaacaactttctctc 47014992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 50334760 - 50334706
Alignment:
Q  190 ggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||||||||| ||||||||||||||  || |||||||||| ||| ||||||||||    
T  50334760 ggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacat 50334706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 53662492 - 53662446
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||| | |||| ||||||||||| |||||||    
T  53662492 gatatttgtacaactattttgtaacaatttttgtacaactttctctc 53662446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Complemental strand, 36364832 - 36364803
Alignment:
Q  263 tttatgacaacttttgtacaaccttctctc 292  Q
    ||||||||||||||||||||||||||||||    
T  36364832 tttatgacaacttttgtacaaccttctctc 36364803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 42853946 - 42853991
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctct 291  Q
    |||||||||||||||||||| |||||||||||  ||||| ||||||    
T  42853946 gatatttgtacaactattttttgacaacttttagacaactttctct 42853991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 35004139 - 35004283
Alignment:
Q  99 ttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtcatgcatggacttggggggatgatagagaaggtgacttttggaagaccg 198  Q
    |||||||||||| |  | |||||||||||| | |||||| |||||| ||| || |  |||||||||||| | ||||  ||||  ||||||||||||||||    
T  35004139 ttatccatattgattcaaatcatagaacatgttatgtagtagtacaagtgccaggagtggacttggggg-aggataaggaagaagacttttggaagaccg 35004237  T
Q  199 tttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    | |||||| |||||||| || || ||||||||||| ||||||||||    
T  35004238 tgtatttttcacaacttgtcaaatatgatagcgacgttgattacat 35004283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 244
Target Start/End: Complemental strand, 26224914 - 26224768
Alignment:
Q  97 ctttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtcatgcatggacttggggggatgatagagaaggtgacttttggaagac 196  Q
    ||||||||||||||||  | |||||||||||  | ||||   |||| |||||||| || |||||||||| | | ||||  ||||  ||||||||||||||    
T  26224914 ctttatccatattggttcaaatcatagaacacgtgatgtgatagtaaatgtgtcaggcgtggacttgggag-aggataaggaagaggacttttggaagac 26224816  T
Q  197 cgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    | | ||||||| | ||||| ||||||||||||| ||| ||||||||||    
T  26224815 cttgtattttctagaacttgtcgaagatgatagtgacgttgattacat 26224768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 3366461 - 3366415
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  3366461 gatatttgtacatctattttattacaacttttgtacaaccttctctc 3366415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 43622012 - 43621966
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  43622012 gatatttgtacaactattttatgacaacttttgaacaactttctctc 43621966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 43791866 - 43791820
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||    
T  43791866 gatatttgtacatccattttatgacaacttttgtacaaccttctctc 43791820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 19379446 - 19379637
Alignment:
Q  52 ccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagtacatgtgtca 151  Q
    ||||||||||||| | |||||||| ||| || ||||| ||   |  ||||||||| |||||  | |||| ||||||| | |||||| |||||| ||  ||    
T  19379446 ccccaccgacaagttggacgagttgaaggcaaaacttgacgacttatttatccatgttggttcaaatcacagaacatattatgtagtagtacaagttcca 19379545  T
Q  152 tgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
     || ||| |||||||| | ||||  |||| ||||  |||||||||||| ||||||||||||||  || |||||||||| ||| ||||||||||    
T  19379546 ggcgtgggcttggggg-aggataaggaagatgaccgttggaagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacat 19379637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 41634377 - 41634286
Alignment:
Q  44 tttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgta 136  Q
    ||||||||||||||||| ||| | || ||||| |||||| || |||| ||||||||||||||| |||||||| || | | |||||||||||||    
T  41634377 tttttaacccccaccgataagttggatgagttgaagacacaatttaaaagatactttatccatcttggtgaaaat-aaaaaacatctcatgta 41634286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 19507070 - 19507164
Alignment:
Q  43 ttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggt-gaacatcatagaacatctcatgta 136  Q
    |||||||||||||||||||||| |  | ||||| ||| || ||||||||||||| ||| || || ||||| ||| |||| |||||||||||||||    
T  19507070 ttttttaacccccaccgacaagttgaatgagttgaaggcacaacttaacagatattttgtcaatcttggtggaaaatcaaagaacatctcatgta 19507164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 14255310 - 14255342
Alignment:
Q  247 atatttgtacaactattttatgacaacttttgt 279  Q
    |||||||||||||||||||||||||||||||||    
T  14255310 atatttgtacaactattttatgacaacttttgt 14255342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 28758867 - 28758919
Alignment:
Q  192 aagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||||||| |||| |||||||||| || |||||||||||||| ||||||||||    
T  28758867 aagaccgtgtattatccacaacttctcaaagatgatagcgacgttgattacat 28758919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 31101119 - 31101191
Alignment:
Q  43 ttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaa 115  Q
    ||||||||||||| |||||||| | || |||||||||||| ||||||| | ||||||| ||||| || |||||    
T  31101119 ttttttaacccccgccgacaagttggatgagtttaagacacaacttaataaatactttgtccatctttgtgaa 31101191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 44050022 - 44050069
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgt-acaaccttctctc 292  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  44050022 gatacttgtacaaccattttatgacaacttttgtgacaaccttctctc 44050069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 5852481 - 5852527
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| |||||   ||||||||||||||||||||||||    
T  5852481 gatatttgtacaaccatttttgtacaacttttgtacaaccttctctc 5852527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 20974360 - 20974406
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    ||||||| |||||||| ||| |||||||||||||||||| |||||||    
T  20974360 gatatttttacaactaatttgtgacaacttttgtacaactttctctc 20974406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 22303210 - 22303248
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaac 284  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  22303210 gatatttgtacaactattttttgacaacttttgaacaac 22303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 29168732 - 29168778
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| |||||||||||| ||||| |||||||    
T  29168732 gatatttgtacaaccattttttgacaacttttgcacaactttctctc 29168778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 29893617 - 29893663
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||| ||| ||| |||||||||||||| |||||||    
T  29893617 gatatttgtacaactaatttgtgataacttttgtacaactttctctc 29893663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 36383469 - 36383515
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||  ||||| |||||||||||||||||| |||||||    
T  36383469 gatatttgtacaaagattttgtgacaacttttgtacaactttctctc 36383515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 36909907 - 36909861
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| |||||||||||| ||||| |||||||    
T  36909907 gatatttgtacaaccattttgtgacaacttttggacaactttctctc 36909861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 8756090 - 8756167
Alignment:
Q  43 ttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatca 120  Q
    ||||||| |||||| ||||||| | || |||||||||||  ||||||||| ||| ||||||||| |||| ||| ||||    
T  8756090 ttttttatcccccatcgacaagttggaagagtttaagacgcaacttaacaaatattttatccatcttggagaaaatca 8756167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 9827374 - 9827313
Alignment:
Q  183 gacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    ||||| |||||||| || |||| || ||||||| || |||||||||||||| ||||||||||    
T  9827374 gacttctggaagactgtgtattatcaacaacttctcaaagatgatagcgacgttgattacat 9827313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 36175750 - 36175778
Alignment:
Q  246 gatatttgtacaactattttatgacaact 274  Q
    |||||||||||||||||||||||||||||    
T  36175750 gatatttgtacaactattttatgacaact 36175778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 40371128 - 40371172
Alignment:
Q  248 tatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||| ||||||||||| || |||||||||||||| ||||    
T  40371128 tatttgtacatctattttatgataatttttgtacaaccttatctc 40371172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 204509 - 204463
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  204509 gatatttgtacatctattttctgacaacttttgtacaaccttctctc 204463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 3339563 - 3339517
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||||    
T  3339563 gatatttgtacaaccattttgtgacaacttttgtacaactttctctc 3339517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 8356540 - 8356652
Alignment:
Q  42 cttttttaacccccaccgacaagctagacgagtttaagacataacttaacagatactttatccatattggtgaacatcatagaacatctcatgtaggagt 141  Q
    |||||||||||| || | ||| | |||| ||||| ||| || ||||||||||||| ||| | ||| |||||||| |||| | |||||||||||||   ||    
T  8356540 cttttttaaccctcatcaacaggttagatgagttgaaggcacaacttaacagatattttgttcatcttggtgaaaatcaaataacatctcatgtatttgt 8356639  T
Q  142 acatgtgtcatgc 154  Q
    ||| |||||||||    
T  8356640 acaggtgtcatgc 8356652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 17902756 - 17902710
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||| ||||| ||||||||||||||| |||||| |||||||    
T  17902756 gatatttgtataactaatttatgacaacttttatacaactttctctc 17902710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 27334865 - 27334899
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgta 280  Q
    |||||||||||||||||||| ||||||||||||||    
T  27334865 gatatttgtacaactattttgtgacaacttttgta 27334899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 27395605 - 27395639
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgta 280  Q
    |||||||||||||||||||| ||||||||||||||    
T  27395605 gatatttgtacaactattttgtgacaacttttgta 27395639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 32729896 - 32729942
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||| ||||| ||||||||||| |||||| |||||||    
T  32729896 gatatttgtacaaccattttctgacaacttttatacaactttctctc 32729942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 29467373 - 29467402
Alignment:
Q  247 atatttgtacaactattttatgacaacttt 276  Q
    ||||||||||||||||||||||||||||||    
T  29467373 atatttgtacaactattttatgacaacttt 29467402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 1031098 - 1031150
Alignment:
Q  192 aagaccgtttattttccacaacttatcgaagatgatagcgacattgattacat 244  Q
    |||||||| ||||||||||||||  || |||||||||| ||| ||||||||||    
T  1031098 aagaccgtgtattttccacaactagtcaaagatgatagtgacgttgattacat 1031150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 32931 - 33030
Alignment:
Q  144 atgtgtcatgcatggacttggggggatgatagagaaggtgacttttggaagaccgtttattttccacaacttatcgaagatgatagcgacattgattaca 243  Q
    |||||||| |||||||||| |||||| ||||  ||||  |||||  |||||||||| |||| ||||||| || || |||| ||||||||| |||||||||    
T  32931 atgtgtcaggcatggactt-gggggaggataaggaagaagacttcaggaagaccgtgtattatccacaatttttcaaagacgatagcgacgttgattaca 33029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 1085 - 1131
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||||||| |||||||||||  ||||| |||||||    
T  1085 gatatttgtacaactattttgtgacaacttttaaacaactttctctc 1131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 440725 - 440771
Alignment:
Q  246 gatatttgtacaactattttatgacaacttttgtacaaccttctctc 292  Q
    |||||||||||||||| |||||||||||||||  ||||| |||||||    
T  440725 gatatttgtacaactactttatgacaacttttagacaactttctctc 440771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University