View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_43 (Length: 279)
Name: NF9893_low_43
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 11817373 - 11817555
Alignment:
| Q |
10 |
gctttaatgtctgtggttctaaatagttatcatgttctatcaaaccgttatcttttcagtttttctgtggctaatttgtagttataatttagtctttcta |
109 |
Q |
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| T |
11817373 |
gctttaatgtctgtggttctaaatagttatcatgttctatcaaaccgttatcttttcagtttttctgtggctaatttgtagttataatttagtctttcta |
11817472 |
T |
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| Q |
110 |
tcatttggcttatcctttcagatatggagctgtatgttgtttatctttagctttgttggtttgttatggt-ggttatattctt |
191 |
Q |
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| T |
11817473 |
tcatttggcttatcctttcagatatggagctgtatgttgtttatctttacctttgttggtttgttttggtgggttatattctt |
11817555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 11821768 - 11821986
Alignment:
| Q |
12 |
tttaatgtctgtggttctaaatagttatcatgttctatcaaaccgttatctt-----ttcagtttt-tctgtggctaatttgtagttataatttagtctt |
105 |
Q |
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| T |
11821768 |
tttaatgtctgtggttctaaatggttatcatcttctatcaaaccgttatcttaattattaagttttttctgtggctacattgtagttatagtgtagtctt |
11821867 |
T |
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| Q |
106 |
tctatcatttggcttatcctttcagatatggagctgtatgttgtttatctttagctttgttggtttgttatggt-ggttatattcttcccaaccttttgt |
204 |
Q |
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| T |
11821868 |
tctatcatttggcttatcccttcagatatggagcagtatgttgtttatttttagctttgttggtttgttatggtgggttatattcttcctaaccttttgt |
11821967 |
T |
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| Q |
205 |
gaagctggctgtaatgatt |
223 |
Q |
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| T |
11821968 |
gaagctggctgtaatgatt |
11821986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 69 - 221
Target Start/End: Original strand, 11832285 - 11832438
Alignment:
| Q |
69 |
tttttctgtggctaatttgtagttataatttagtctttctatcatttggcttatcctttcagatatggagctgtatgttgtttatctttagctttgttgg |
168 |
Q |
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|||||||| ||||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
11832285 |
tttttctgaggctacattgtagttatagtgtagtctttctatcatttggcttatcccttcagatatggagcagtatgttgtttatttttagctttgttgg |
11832384 |
T |
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| Q |
169 |
tttgttatggt-ggttatattcttcccaaccttttgtgaagctggctgtaatga |
221 |
Q |
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| T |
11832385 |
tttgttatggtgggttatattcttcctaaccttttgtgaagctggctgtaatga |
11832438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 11817560 - 11817603
Alignment:
| Q |
223 |
tttacactcactatgtcttatgctttgtgttgataaaaatatct |
266 |
Q |
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| T |
11817560 |
tttacactcactatgtcttatgctttgtgttgataaaaatatct |
11817603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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