View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_low_45 (Length: 257)

Name: NF9893_low_45
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_low_45
NF9893_low_45
[»] chr6 (2 HSPs)
chr6 (5-255)||(34216654-34216904)
chr6 (139-173)||(14385448-14385482)
[»] chr3 (2 HSPs)
chr3 (45-241)||(21093388-21093584)
chr3 (46-97)||(14679836-14679887)
[»] chr7 (2 HSPs)
chr7 (179-257)||(11482828-11482906)
chr7 (45-126)||(11482902-11482983)
[»] chr4 (2 HSPs)
chr4 (71-174)||(19551447-19551550)
chr4 (138-173)||(3009039-3009074)
[»] scaffold0061 (1 HSPs)
scaffold0061 (45-97)||(38085-38137)
[»] scaffold0017 (1 HSPs)
scaffold0017 (45-97)||(160642-160694)
[»] chr2 (2 HSPs)
chr2 (45-97)||(20380961-20381013)
chr2 (45-95)||(25976639-25976689)
[»] scaffold0567 (1 HSPs)
scaffold0567 (138-173)||(839-874)
[»] scaffold0490 (1 HSPs)
scaffold0490 (46-97)||(12090-12141)
[»] scaffold0125 (1 HSPs)
scaffold0125 (46-97)||(31435-31486)
[»] chr8 (2 HSPs)
chr8 (139-173)||(17271738-17271772)
chr8 (138-174)||(45270546-45270582)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 34216654 - 34216904
Alignment:
Q  5 agtggagtagcagagagtgtctgttcttgcaacagagatatatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatcca 104  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34216654 agtggtgtagaagagagtgtctgttcttgcaacagagacatatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacggatcca 34216753  T
Q  105 gatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216754 gatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgac 34216853  T
Q  205 caaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagccc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216854 caaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagccc 34216904  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 14385448 - 14385482
Alignment:
Q  139 ttaaaatccttcgtccattgggagagacgaaggag 173  Q
    |||||||||||||||||||||||||| ||||||||    
T  14385448 ttaaaatccttcgtccattgggagaggcgaaggag 14385482  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 21093584 - 21093388
Alignment:
Q  45 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaa 144  Q
    |||||||||||| ||  ||||| || |||||||||| ||||| || ||||| | |||||| || ||||| |||||||| ||||||||||| | |  |||     
T  21093584 tatttccttcaaagtacgttcctgctaatattcttgtggtaattcgaccaagcggatccaaatggaagcatgagtctggttctgtgaataatgagaaaag 21093485  T
Q  145 tccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaa 241  Q
    || ||   ||||||||||| |||||||||| ||||| | ||||  || |||| |||||||||||| ||  |||||||||| ||||||||||||||||    
T  21093484 tcttttagccattgggagaaacgaaggagacctggccttaaattgatagtactagccgaccaaatattccgtaagtcctcggccgactcaaaatgaa 21093388  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 14679836 - 14679887
Alignment:
Q  46 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 97  Q
    ||||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  14679836 atttccttcaatgtacgttcccgccaatactcttgcggtaactcaaccaaac 14679887  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 11482906 - 11482828
Alignment:
Q  179 gcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccct 257  Q
    |||||||||||| | ||||||  |||||| ||||| |||||||||||||||||| || |||||||||||||||||||||    
T  11482906 gcttcaaatcaacgataccagttgaccaattttttcgtaagtcctctgccgactaaatatgaaaatcgtaatagcccct 11482828  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 11482983 - 11482902
Alignment:
Q  45 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttc 126  Q
    ||||||||||  ||||||||||| |||||||||||||||||| ||||||| || | | ||||||||||| ||||||||||||    
T  11482983 tatttccttcggtgtttgttcccaccaatattcttgcggtaattcaaccatacgggttcagatagaagcatgagtctgcttc 11482902  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 19551550 - 19551447
Alignment:
Q  71 aatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaag 170  Q
    |||||||||| || || |||||||| |  ||||| || ||||||||||| ||||||| |||||| | |||||| ||||||||| |||| |||||||||||    
T  19551550 aatattcttggggcaattcaaccaagcgaatccaaatggaagcgtgagtttgcttctatgaataatgattaaagtccttcgtctattgtgagagacgaag 19551451  T
Q  171 gaga 174  Q
    ||||    
T  19551450 gaga 19551447  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 3009039 - 3009074
Alignment:
Q  138 attaaaatccttcgtccattgggagagacgaaggag 173  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3009039 attaaaatccttcgtccattgggagaggcgaaggag 3009074  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 38137 - 38085
Alignment:
Q  45 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 97  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  38137 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 38085  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 160642 - 160694
Alignment:
Q  45 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 97  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  160642 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 160694  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 20381013 - 20380961
Alignment:
Q  45 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 97  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  20381013 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 20380961  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 25976639 - 25976689
Alignment:
Q  45 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaa 95  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| || |||||    
T  25976639 tatttccttcaaggttcgttcccgccaatactcttgcggtaactccaccaa 25976689  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 874 - 839
Alignment:
Q  138 attaaaatccttcgtccattgggagagacgaaggag 173  Q
    ||||||||||||||||||||||||||| ||||||||    
T  874 attaaaatccttcgtccattgggagaggcgaaggag 839  T

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Target: scaffold0490 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 12141 - 12090
Alignment:
Q  46 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 97  Q
    ||||||||||||||  | ||||||||||| ||||||||||| ||||||||||    
T  12141 atttccttcaatgtacgctcccgccaatactcttgcggtaactcaaccaaac 12090  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 31435 - 31486
Alignment:
Q  46 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 97  Q
    ||||||||||||||   |||||||||||| ||||||||||| ||||||||||    
T  31435 atttccttcaatgtacattcccgccaatactcttgcggtaactcaaccaaac 31486  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 17271772 - 17271738
Alignment:
Q  139 ttaaaatccttcgtccattgggagagacgaaggag 173  Q
    |||||||||||||||||||||||||| ||||||||    
T  17271772 ttaaaatccttcgtccattgggagaggcgaaggag 17271738  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 45270546 - 45270582
Alignment:
Q  138 attaaaatccttcgtccattgggagagacgaaggaga 174  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45270546 attaaaatccttcgtccattgagaaagacgaaggaga 45270582  T

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