View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9893_low_50 (Length: 250)
Name: NF9893_low_50
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_50 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 38675184 - 38674941
Alignment:
| Q |
11 |
cagagaaatactagtaatttacagtaagaaaagacagagacgtatcatggac-------------aaaccgcgccaacagagaatagcgccgaaattaaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38675184 |
cagagaaatactagtaatttacagtaagaaaagacatagacgtatcatggactctttacacacacaaaccgcgccaacagagaatagcgccgaaattaaa |
38675085 |
T |
|
| Q |
98 |
caaaacaa-----taagataagggcgcgtctcactttaaattttaaaataaagactgtggtcccctcccctaatagcttcctctatacaccaccgcaacc |
192 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38675084 |
caaaacaaaacaataagataagggcgcgtctcactttaaattttaaaataaagactgtggtcccctcccctaatagcttcctctatacaccaccgcaacc |
38674985 |
T |
|
| Q |
193 |
cacggtcgaagaggtcgtacaaataaaggaacctcacctaccct |
236 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38674984 |
cacggtcgaagagctcgtacaaataaaggaacctcacctaccct |
38674941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University