View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9893_low_51 (Length: 249)
Name: NF9893_low_51
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_51 |
 | |
|
| [»] scaffold0413 (1 HSPs) |
| | |
|
| [»] scaffold1838 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 32450275 - 32450485
Alignment:
| Q |
16 |
caataccacaaaa-catatatgcatagaaattaaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-cta |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
32450275 |
caataccacaaaaacatatatgcatagaaa-----aataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaacta |
32450369 |
T |
|
| Q |
114 |
ataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacata |
213 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
32450370 |
ataacttttataaaaagttaaaatttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacaca |
32450469 |
T |
|
| Q |
214 |
atcctagtacttagta |
229 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32450470 |
atcctagtacttagta |
32450485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 23260617 - 23260817
Alignment:
| Q |
47 |
aaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccata |
145 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
23260617 |
aaaaataaaataaatgtcattccacataacattatcatacaaacatcatataaaatataattaaactaataacttttataaaaggctaaattttaccata |
23260716 |
T |
|
| Q |
146 |
tgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaa |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||| |
|
|
| T |
23260717 |
tgaattcatattttagttgttttgttcttttcaagagacaagaatctctacctctaattcataacataatcctaatacttagtaagaacgtatggggaaa |
23260816 |
T |
|
| Q |
246 |
a |
246 |
Q |
| |
|
| |
|
|
| T |
23260817 |
a |
23260817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 25005382 - 25005155
Alignment:
| Q |
16 |
caataccacaaaa-catatatgcatagaaattaaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataatt-aacta |
113 |
Q |
| |
|
||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
25005382 |
caataccacaaaaacatatatgaatag-----aaaaataaaataaatgtcattccacataaaattatcatacagacatcatataaaatataattaaacta |
25005288 |
T |
|
| Q |
114 |
ataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacata |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25005287 |
ataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacata |
25005188 |
T |
|
| Q |
214 |
atcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
||| |||||||||||| | |||||||| |||| |
|
|
| T |
25005187 |
atcttagtacttagtaagaacgtatggggaaaa |
25005155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 34636387 - 34636198
Alignment:
| Q |
58 |
aaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatat |
156 |
Q |
| |
|
||||||||| |||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34636387 |
aaatgtcatgccacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat |
34636288 |
T |
|
| Q |
157 |
tttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
34636287 |
tttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaa |
34636198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 26182602 - 26182690
Alignment:
| Q |
157 |
tttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||| | |||||| |||| |
|
|
| T |
26182602 |
tttagttgtttt-ttcttctcaacatacaagaatctctaactctaattcataacatcatcctaatacttagtatggacatatggggaaaa |
26182690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 10751599 - 10751637
Alignment:
| Q |
47 |
aaaaataaaataaatgtcattccacattacattatcata |
85 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10751599 |
aaaaataaaataaatgtcattccacataacattatcata |
10751637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 24992551 - 24992424
Alignment:
| Q |
119 |
ttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcct |
218 |
Q |
| |
|
||||||||||| |||||||||||| | || |||||||| ||||||| ||||||||| |||||||| ||||| | |||||||||||||| ||| |
|
|
| T |
24992551 |
ttttataaaagaataaattttaccacgtaaagaaatattttaattgtttt--tcttttcaaaa-acaagaatttctacttataattcataacatatccct |
24992455 |
T |
|
| Q |
219 |
agtacttagtatgggcgtatgggaaaaagcc |
249 |
Q |
| |
|
|||||||| ||| | | |||||||||||||| |
|
|
| T |
24992454 |
agtacttaatatagacatatgggaaaaagcc |
24992424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 35762062 - 35762291
Alignment:
| Q |
16 |
caataccacaaaa-catatatgcatagaaattaaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-cta |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||| |
|
|
| T |
35762062 |
caataccacaaaaacatatatgcatagaaa-----aataaaataaatgtcattccacataacattatcatacacacatcatataaaatatagttaaacta |
35762156 |
T |
|
| Q |
114 |
ataactttt--ataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataaca |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35762157 |
ataacttttttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataaca |
35762256 |
T |
|
| Q |
212 |
taatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |
|
|
| T |
35762257 |
taatcctagtacttagtatggacgtatggggaaaa |
35762291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 9537402 - 9537586
Alignment:
| Q |
54 |
aaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattc |
152 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
9537402 |
aaataaatgtcattctacataacattatcatacaaacatcatataaaatataattaaactaataacttttataaaaggttaaattttacaatataaattt |
9537501 |
T |
|
| Q |
153 |
atattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatg |
239 |
Q |
| |
|
|||||||| ||||||| |||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
9537502 |
atattttacttgtttt--tcttctcaacagacaagaatctatacctctaattcataacatcatcctagtactcagtatggacgtatg |
9537586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 37667265 - 37667389
Alignment:
| Q |
122 |
tataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagt |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37667265 |
tataaaaggttaaattttatcatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctatt |
37667364 |
T |
|
| Q |
222 |
acttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||| | |||||||| |||| |
|
|
| T |
37667365 |
acttagtaagaacgtatggggaaaa |
37667389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 246
Target Start/End: Complemental strand, 16074910 - 16074721
Alignment:
| Q |
49 |
aaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa--ctaataacttttataaaaggttaaattttaccatat |
146 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
16074910 |
aaataaaataaatgtcattctacattacattatca-----------tataaaatataattaaatctaataacttttataaaagattaaattttaacatat |
16074822 |
T |
|
| Q |
147 |
gaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataa---cataatcctagtacttagtatgggcgtatgggaa |
243 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||||||| |||||||| ||||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
16074821 |
gaattcatattttaattgttt--ttctttttaacggacaaaaatctctatctctaattcataatatcatcatcccagtacttagtatgaacgtatgggaa |
16074724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 37667217 - 37667271
Alignment:
| Q |
47 |
aaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaa |
101 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
37667217 |
aaaaataaaataaaagtcattccacataacattatcatacagacatcatataaaa |
37667271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 5004759 - 5004959
Alignment:
| Q |
47 |
aaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccata |
145 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
5004759 |
aaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaatttcaccata |
5004858 |
T |
|
| Q |
146 |
tgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaa |
245 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
5004859 |
taaattcatattttagttgttttgttcttttcaaaagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaa |
5004958 |
T |
|
| Q |
246 |
a |
246 |
Q |
| |
|
| |
|
|
| T |
5004959 |
a |
5004959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 58 - 246
Target Start/End: Original strand, 46404612 - 46404801
Alignment:
| Q |
58 |
aaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatat |
156 |
Q |
| |
|
||||| ||||||||| ||||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46404612 |
aaatgccattccacaaaacattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat |
46404711 |
T |
|
| Q |
157 |
tttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
46404712 |
tttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaa |
46404801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 16975450 - 16975285
Alignment:
| Q |
62 |
gtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatatttta |
160 |
Q |
| |
|
|||||||||||| | ||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16975450 |
gtcattccacataaaattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta |
16975351 |
T |
|
| Q |
161 |
gttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtactta |
226 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16975350 |
gttgttttgttcttttcaacaaacaagaatctctacctctaattcataacataatcctagtactta |
16975285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 11967931 - 11968119
Alignment:
| Q |
48 |
aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat |
146 |
Q |
| |
|
||||||||||||||||||||| || ||||| | ||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11967931 |
aaaataaaataaatgtcattctacggaacatttt-atacacacatcgtataaaatataattaaactaataacttttataaaaggttaaattttaccatat |
11968029 |
T |
|
| Q |
147 |
gaattcatattttagttgttttg--ttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaa |
244 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
11968030 |
aaattcatattttagattttttgtcttcttttca------aagaatctctacc------tcataacatcatcctagtacttagtatggacgtatgggaaa |
11968117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 16475381 - 16475289
Alignment:
| Q |
154 |
tattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||| |
|
|
| T |
16475381 |
tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaa |
16475289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0413 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0413
Description:
Target: scaffold0413; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 9079 - 8851
Alignment:
| Q |
16 |
caataccacaaaa-catatatgcatagaaattaaaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-cta |
113 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
9079 |
caataccacaaaaacatatatgaatagaaa----aaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaacta |
8984 |
T |
|
| Q |
114 |
ataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacata |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
8983 |
ataactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttcttttcaacagacaagaatttatacctctaattcataacata |
8884 |
T |
|
| Q |
214 |
atcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||||||||||| | |||||||| |||| |
|
|
| T |
8883 |
atcctagtacttagtaagaacgtatggggaaaa |
8851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 48 - 246
Target Start/End: Original strand, 21491537 - 21491737
Alignment:
| Q |
48 |
aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat |
146 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| | || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21491537 |
aaaataaaataaatgtcattctacataacatttt-atgcacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatat |
21491635 |
T |
|
| Q |
147 |
gaattcatattttagttgttttgt--tcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaa |
244 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
21491636 |
aaattcatattttagtttttttgtcttcttttcaaccgacaagaatctctacctctaattcataacatcatcctagtacttagtatggacgtatgggaaa |
21491735 |
T |
|
| Q |
245 |
aa |
246 |
Q |
| |
|
|| |
|
|
| T |
21491736 |
aa |
21491737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 58 - 246
Target Start/End: Original strand, 15873987 - 15874176
Alignment:
| Q |
58 |
aaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatat |
156 |
Q |
| |
|
||||| ||||||||| ||||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15873987 |
aaatgccattccacaaaacattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat |
15874086 |
T |
|
| Q |
157 |
tttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
15874087 |
tttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaa |
15874176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 22077841 - 22077644
Alignment:
| Q |
48 |
aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat |
146 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
22077841 |
aaaataaagcaaatgtcattctacataacattatcatacacacatcatataaaatataattaaactaataactttttgaaatggttaaattttaccatat |
22077742 |
T |
|
| Q |
147 |
gaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||| |||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
22077741 |
aaatttatattttagttgtttt--tcttcttaacagacaagaatctctacctctaattcataacatcatcctagtacttagtatgaacatatgggaaaaa |
22077644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 48576540 - 48576343
Alignment:
| Q |
48 |
aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa--ctaataacttttataaaaggttaaattttaccata |
145 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||| ||||||||||| |||| | ||||||||||||||| |
|
|
| T |
48576540 |
aaaatagaataaatgtcattctgcatcacattatcatacacacatcatataatatataattaaaactaataactttaataagatattaaattttaccata |
48576441 |
T |
|
| Q |
146 |
tgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaa |
245 |
Q |
| |
|
| ||||||||||||| || |||| ||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| ||| |
|
|
| T |
48576440 |
taaattcatattttaattatttt---ctttttaacggataagaatctctacctctaattcataacattatcccagtacttagtatggacgtatggggaaa |
48576344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 18367412 - 18367569
Alignment:
| Q |
97 |
taaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatattttagtt--gtttt-gttcttttcaacggacaagaatct |
192 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||| |||||||||| |
|
|
| T |
18367412 |
taaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttaatttggttttctttcttttcaacaaacaagaatct |
18367511 |
T |
|
| Q |
193 |
ctacctctaattcataacataatcctagtacttagtatgggcgtat-gggaaaaagcc |
249 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||| ||||| ||||| ||||||||||| |
|
|
| T |
18367512 |
ctacctttaattcataacatcgtcctagttcttattatggacgtatagggaaaaagcc |
18367569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 48654339 - 48654467
Alignment:
| Q |
116 |
aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataat |
215 |
Q |
| |
|
||||||| |||| ||||||| |||||| | ||| |||||||||||||||| ||||| ||| ||||||||| | ||| ||||||||| ||||| || |
|
|
| T |
48654339 |
aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat |
48654436 |
T |
|
| Q |
216 |
cctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |
|
|
| T |
48654437 |
cctagtacttagtatggacgtatggggaaaa |
48654467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 9993427 - 9993358
Alignment:
| Q |
121 |
ttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaat |
190 |
Q |
| |
|
|||||||| ||| |||||||||||| ||| |||||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
9993427 |
ttataaaatattagattttaccatataaataaatattttaattgttttcttcttttcaaaagacaagaat |
9993358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 97 - 246
Target Start/End: Complemental strand, 536891 - 536741
Alignment:
| Q |
97 |
taaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctcta |
195 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
536891 |
taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctcta |
536792 |
T |
|
| Q |
196 |
cctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
536791 |
cctctaattcataacataatcctagtacttagtaagaacgtatggggaaaa |
536741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 48 - 249
Target Start/End: Original strand, 4558012 - 4558215
Alignment:
| Q |
48 |
aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat |
146 |
Q |
| |
|
||||||||||||| ||||||| || | ||||||| ||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558012 |
aaaataaaataaaagtcattctacgtaacattattatacacacattatataaaatatgattaaactaataacttttataaaaggttaaattttaccatat |
4558111 |
T |
|
| Q |
147 |
gaattcatattttagttgttttgt-tcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaa |
245 |
Q |
| |
|
|||||||||||||||| |||| | |||| ||||| ||||||||||||||||||||| ||||||||| |||||| |||||||||| | |||||||||||| |
|
|
| T |
4558112 |
aaattcatattttagtttttttctctcttctcaacagacaagaatctctacctctaaatcataacatcatcctaatacttagtatagacgtatgggaaaa |
4558211 |
T |
|
| Q |
246 |
agcc |
249 |
Q |
| |
|
|||| |
|
|
| T |
4558212 |
agcc |
4558215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 537014 - 536895
Alignment:
| Q |
58 |
aaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatatgaattcatat |
156 |
Q |
| |
|
||||| |||||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
537014 |
aaatgccattccacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat |
536915 |
T |
|
| Q |
157 |
tttagttgttttgttctttt |
176 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
536914 |
tttagttgttttgttctttt |
536895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 28969223 - 28969413
Alignment:
| Q |
48 |
aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat |
146 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28969223 |
aaaataaaataaatgtcattctacataaaattatcatacacacatcatatagaatataattaaactaataacttttataaaatgttaaattttaccatat |
28969322 |
T |
|
| Q |
147 |
gaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatg |
239 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
28969323 |
aaattaatattttagttgtttt--tcttctcaacagacaagaatttctacctctaattcataacatcatcctagtacttagtatggacgtatg |
28969413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 49499221 - 49499045
Alignment:
| Q |
48 |
aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataattaa-ctaataacttttataaaaggttaaattttaccatat |
146 |
Q |
| |
|
||||||||||||||||||||| || | |||| | ||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
49499221 |
aaaataaaataaatgtcattctacgtaacatctt-atacacacattatataaaatataattaaactaataatttttataaaaggttaaattttactatat |
49499123 |
T |
|
| Q |
147 |
gaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtact |
224 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||| |||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
49499122 |
aaattcatattttagttttttttttcttctcaacagacaagaatctccacctctaattcataacatgatcctagtact |
49499045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 41868655 - 41868578
Alignment:
| Q |
171 |
tcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaagc |
248 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||| ||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
41868655 |
tcttttcaagagacaagaatttctacttctaattcacaacatcatcctaatacttagtatggacgtatgggaaaaagc |
41868578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 69352 - 69261
Alignment:
| Q |
153 |
atattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||||| ||||| ||| || |||||| | ||||| ||||||||||| ||||||||||||| |
|
|
| T |
69352 |
atattttaattgtttt--tcttttcaagagacaagaattgctaccactatttaataacacagtcctaacacttagtatggacgtatgggaaaaa |
69261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 32735394 - 32735531
Alignment:
| Q |
109 |
aactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcata |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32735394 |
aactaatatcttttataaaaggttaaatttcaccatatgaatgcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcata |
32735493 |
T |
|
| Q |
209 |
acataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| |||| |
|
|
| T |
32735494 |
acataatcctagcacttagtaagaacgtatggggaaaa |
32735531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 28267692 - 28267783
Alignment:
| Q |
153 |
atattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||| | ||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
28267692 |
atattttagttgtttt--tcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatgggaaaaa |
28267783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 12774954 - 12775045
Alignment:
| Q |
153 |
atattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacataatcctagtacttagtatgggcgtatgggaaaaa |
246 |
Q |
| |
|
|||||||||||||||| ||||| ||| || |||||| | ||| ||||||||| ||||| |||||||||||| |||||| |||||||| |||| |
|
|
| T |
12774954 |
atattttagttgtttt--tctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtatggacgtatggggaaaa |
12775045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 29270792 - 29270654
Alignment:
| Q |
99 |
aaatataattaac-taataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacggacaagaatctctacc |
197 |
Q |
| |
|
|||||||||||| |||||| |||||||||| ||||||||||| || | | | ||||||||| |||||| |||||||||| ||||||||| ||||| |
|
|
| T |
29270792 |
aaatataattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgttt--ttcttttcaaaagacaagaattgctacc |
29270695 |
T |
|
| Q |
198 |
tctaattcataacataatcctagtacttagtatgggcgtat |
238 |
Q |
| |
|
||| || ||| || || |||| ||||||||||| ||||| |
|
|
| T |
29270694 |
actatttaatagcacaaccctaacacttagtatggacgtat |
29270654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1838 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold1838
Description:
Target: scaffold1838; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 384 - 221
Alignment:
| Q |
48 |
aaaataaaataaatgtcattccacattacattatcatatacacatcatataaaatataatt-aactaataacttttataaaaggttaaattttaccatat |
146 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
384 |
aaaataaaataaatggcattctacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatat |
285 |
T |
|
| Q |
147 |
gaattcatattttagttgttttgttcttttcaacggacaagaatctctacctctaattcataacat |
212 |
Q |
| |
|
||| |||||||| || ||| ||||||| ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
284 |
agatttatattttaattattt--ttctttttaacaaacaagaatctctatctctaattcataacat |
221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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