View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_59 (Length: 239)
Name: NF9893_low_59
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 594735 - 594519
Alignment:
| Q |
1 |
cctttaacggaacatgtcgatgccaaatcaaacctgaagccgcatctgtctgaatgttttcatatttagtcaacacttcatacacagaacgaacagagta |
100 |
Q |
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| T |
594735 |
cctttaacggaacatgtcgatgccaaatcaaacc------cgcatcagtctgaatgttttcatctttagtcaacacttcatacacagaacggacagaata |
594642 |
T |
|
| Q |
101 |
acttcctgaattatcaaggcgccatctccatttatcaaatatagtaatctgcaaaacaacattagccaacaatgtcctacactctgttaccaactcctcc |
200 |
Q |
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| T |
594641 |
acttcccaaattatcaaggcgccatctccatttatcaaatgtagtaacctgcaaaacaacattagccaacaatgccctacactctgataccaactcctcc |
594542 |
T |
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| Q |
201 |
tcctaatcccataatctcctccg |
223 |
Q |
| |
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||||| ||| |||| |||||||| |
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| T |
594541 |
tcctagtcctataacctcctccg |
594519 |
T |
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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 8901963 - 8902023
Alignment:
| Q |
70 |
tcaacacttcatacacagaacgaacagagtaacttcctgaattatcaaggcgccatctcca |
130 |
Q |
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| T |
8901963 |
tcaacacatcatacacagaacgaacagagtaacttcctgaattatcaagacgccaactcca |
8902023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 32840803 - 32840598
Alignment:
| Q |
9 |
ggaacatgtcgatgccaaatcaaacctgaagccgcatctgtctgaatgttttcatatttagtcaacacttcatacacagaacgaacagagtaacttcctg |
108 |
Q |
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||||||| || |||||| |||||||||||| |||||| || || ||||||| |||||||| || |||||||||||||||||| | || ||||| | |
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| T |
32840803 |
ggaacatatctatgccatatcaaacctgaaaccgcattcatcagagcgttttcagctttagtcagcaactcatacacagaacgaacataatagcttcccg |
32840704 |
T |
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| Q |
109 |
aattatcaaggcgccatctccatttatcaaatatagtaatctgcaaaacaacattagccaacaatgtcctacactctgttaccaactcctcctcctaatc |
208 |
Q |
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|||| || | ||||||||||||| |||| | |||| ||| ||||||||| || |||||| ||||||||| ||||||| |||||||||| |||| |
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| T |
32840703 |
aattttctaaacgccatctccattgatcacctgtagtgtcctgaaaaacaacaatatccaacagaagcctacactccgttaccatctcctcctcccaatc |
32840604 |
T |
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| Q |
209 |
ccataa |
214 |
Q |
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|||||| |
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| T |
32840603 |
ccataa |
32840598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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