View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_60 (Length: 237)
Name: NF9893_low_60
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3190218 - 3190419
Alignment:
| Q |
1 |
ccggaacaagacttcaagaattatcctcccccgaagagtactaatgggagaacaaaagatgactttatttagaatgaaattaaaagaattgaagaaagga |
100 |
Q |
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| T |
3190218 |
ccggaacaagacttcaagaattatcctccaccgaagagtactaatgggagaacaaaagatgactttatttagaatgaaattaaaagaatt---------- |
3190307 |
T |
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| Q |
101 |
atggaagaacagacagtggattgacccttacctcgagactggaataaaatgggttaatatactacatgagagagttaaattgagaaaacggtagcttgta |
200 |
Q |
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| T |
3190308 |
---gaagaacagacagtggaatgagccttacctcgagactggaatataatgggtttatatactagatgagagagttcaattgagaaaacggtagcttgta |
3190404 |
T |
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| Q |
201 |
gtttcaattgttgac |
215 |
Q |
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| T |
3190405 |
gtttcaattgttgac |
3190419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22636520 - 22636566
Alignment:
| Q |
1 |
ccggaacaagacttcaagaattatcctcccccgaagagtactaatgg |
47 |
Q |
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| T |
22636520 |
ccggaacaagacttcaagaattatcctccaccgaagagtactaatgg |
22636566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 17851995 - 17852207
Alignment:
| Q |
1 |
ccggaacaagacttcaagaattatcctcccccga--agagtactaatgggagaacaaaaga-tgactttatttagaatgaaattaaaagaattgaagaaa |
97 |
Q |
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| T |
17851995 |
ccggaacacgacttcaagaattattcttcactcaggagagtacaaatggaagaacaaaagggtgactttatttagaatgaaatt-aaaggattgaagaaa |
17852093 |
T |
|
| Q |
98 |
ggaatggaagaacagacagtggattgacccttacctcgagactggaat---aaaatgggttaatatactacatgagagagttaaattgagaaaacggtag |
194 |
Q |
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| T |
17852094 |
-gaatagaagaacagacaatgaaatgacccttacctcaagacttgaatggcatgaagcatttatataataaatgggagagttcaattgagaaaatggtgg |
17852192 |
T |
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| Q |
195 |
cttgtagtttcaatt |
209 |
Q |
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| T |
17852193 |
cttgtagtttcaatt |
17852207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 13652581 - 13652470
Alignment:
| Q |
35 |
agagtactaatgggagaacaaaa--gatgactttatttagaatgaaattaaaagaattgaagaaaggaatggaagaacagacagtggattgacccttacc |
132 |
Q |
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||||||| | ||| ||||||||| |||||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||| || | | ||||||||| |
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| T |
13652581 |
agagtacaagtggaagaacaaaaaggatgactttatttagaatgagattaaaaggattgaagaaa-gaatagaagaacaaacaatgaaatcacccttacc |
13652483 |
T |
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| Q |
133 |
tcgagactggaat |
145 |
Q |
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| T |
13652482 |
tcaagactggaat |
13652470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 13660706 - 13660595
Alignment:
| Q |
35 |
agagtactaatgggagaacaaaa--gatgactttatttagaatgaaattaaaagaattgaagaaaggaatggaagaacagacagtggattgacccttacc |
132 |
Q |
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||||||| | ||| ||||||||| |||||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||| || | | ||||||||| |
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| T |
13660706 |
agagtacaagtggaagaacaaaaaggatgactttatttagaatgagattaaaaggattgaagaaa-gaatagaagaacaaacaatgaaatcacccttacc |
13660608 |
T |
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| Q |
133 |
tcgagactggaat |
145 |
Q |
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|| |||||||||| |
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| T |
13660607 |
tcaagactggaat |
13660595 |
T |
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