View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9893_low_61 (Length: 236)
Name: NF9893_low_61
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_61 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 4713388 - 4713179
Alignment:
| Q |
18 |
acgggtccaccatctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4713388 |
acgggtccaccatctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaagg |
4713289 |
T |
|
| Q |
118 |
tggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4713288 |
tggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaatat |
4713189 |
T |
|
| Q |
218 |
cctatgctac |
227 |
Q |
| |
|
||||| |||| |
|
|
| T |
4713188 |
cctatactac |
4713179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 4854756 - 4854579
Alignment:
| Q |
20 |
gggtccaccatctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtg |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
4854756 |
gggtccaccatctcttcaactatcactccttcattgtaacattttttgaacaaagcaaccatgttcacttttttcttatccaataaatgatccaaaggtg |
4854657 |
T |
|
| Q |
120 |
gtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggt |
197 |
Q |
| |
|
||||||||||||||| ||||||||| ||| | ||||| |||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
4854656 |
gtctcgcacacaacatctcaagaagtacatcaccgaaagagtacacatcagactttagagtcaacctgtttcgtaggt |
4854579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 4785157 - 4784959
Alignment:
| Q |
18 |
acgggtccaccatctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaagg |
117 |
Q |
| |
|
||||||||||||| ||||||| || || |||||||||||||||| ||| ||| || || ||| | |||||| ||||||||||||| || |||| || |
|
|
| T |
4785157 |
acgggtccaccatatcttcaattaccataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttcttatccaaagaacgaaccaacgg |
4785058 |
T |
|
| Q |
118 |
tggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| | | ||| | |||| | |||||||||||||| |
|
|
| T |
4785057 |
gggtctcgcacacaacacctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaacctttgtcgcatgtagtattctggatccaaata |
4784959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 4698512 - 4698346
Alignment:
| Q |
18 |
acgggtccaccatctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaagg |
117 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| ||| |||| || || | || |||||| ||| ||||||||| || ||||||| |
|
|
| T |
4698512 |
acgggtccaccatctcttcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaagg |
4698413 |
T |
|
| Q |
118 |
tggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaac |
184 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || || ||||||||||| ||||| || |||||| |
|
|
| T |
4698412 |
tggtctcgcacacaatacctcaagaagcacaacaccaaaagagtacacgtcggactttagggtcaac |
4698346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 4817586 - 4817388
Alignment:
| Q |
18 |
acgggtccaccatctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaagg |
117 |
Q |
| |
|
||||||||||||| ||||||| || || |||||||||||||||| ||| ||| || || ||| | |||||| |||||||||||| || |||| || |
|
|
| T |
4817586 |
acgggtccaccatatcttcaattaccataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttcttatccaaagaccgaaccaacgg |
4817487 |
T |
|
| Q |
118 |
tggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| | | ||| | |||| | |||||||||||||| |
|
|
| T |
4817486 |
gggtctcgcacacaacacctcaagaagcacaacaccgaaagagtacacatcagactttagagtcaatctttgtcgcatgtagtattctggatccaaata |
4817388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 4862691 - 4862884
Alignment:
| Q |
26 |
accatctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtggtctcg |
125 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| ||| || | || | || |||||| ||| || ||||| || |||| |||||||||| |
|
|
| T |
4862691 |
accatctcttcaattatgacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttcttttcagaagaacgaaccaatggtggtctcg |
4862790 |
T |
|
| Q |
126 |
cacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaatatcc |
219 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| || |||||||| || || ||||||||| | | || |||||| | |||||||| |||||||| |
|
|
| T |
4862791 |
cacacaacacctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatcc |
4862884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 4652390 - 4652476
Alignment:
| Q |
94 |
cttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt |
180 |
Q |
| |
|
|||||||||| | || ||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| || ||||| |
|
|
| T |
4652390 |
cttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagattttagagt |
4652476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 4635744 - 4635813
Alignment:
| Q |
111 |
ccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt |
180 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
4635744 |
ccaaaggtggcctagcacacaacacctcaagaagcaccacaccgaatgagtacacgtctgatttaagagt |
4635813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 4629779 - 4629865
Alignment:
| Q |
94 |
cttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt |
180 |
Q |
| |
|
|||||||||| | || ||||||||||||| ||||||||||||||||||||||| || || || |||||||||||||| || ||||| |
|
|
| T |
4629779 |
cttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaagaagcaccacaccaaacgagtacacgtcagattttagagt |
4629865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 4665805 - 4665891
Alignment:
| Q |
94 |
cttatccaaagaatgatccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt |
180 |
Q |
| |
|
|||||||||| | || ||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| ||||| || ||||| |
|
|
| T |
4665805 |
cttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaagaagcaccacaccgaacgagtacacatcagattttagagt |
4665891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 4660688 - 4660757
Alignment:
| Q |
111 |
ccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagt |
180 |
Q |
| |
|
|||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| ||||| || ||||| |
|
|
| T |
4660688 |
ccaatggtggcctagcacacaacacctcaagaagcaccacaccgaacgagtacacttcagattttagagt |
4660757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 4671527 - 4671581
Alignment:
| Q |
111 |
ccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacac |
165 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||| || || |||||||||||||| |
|
|
| T |
4671527 |
ccaaaggtggcctagcacacaacacttcaagaagtaccacaccgaatgagtacac |
4671581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 18926968 - 18926908
Alignment:
| Q |
111 |
ccaaaggtggtctcgcacacaacacctcaagaagcacaactccgaatgagtacacgtcaga |
171 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
18926968 |
ccaaaggtggccttgcacacaatacctcaagaagcaccacaccgaatgagtacacgtcaga |
18926908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University