View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9893_low_66 (Length: 227)
Name: NF9893_low_66
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9893_low_66 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4558475 - 4558249
Alignment:
| Q |
1 |
taatttatacgctattacatattttctatatgctgattctcatttgttactgaacactcttcgtttctctagatttctgattttgggttggcgaaacttg |
100 |
Q |
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| T |
4558475 |
taatttatacgctattacatattttctatatgctgattctcatttgttactgaacaatcttcgtttctctagatttctgattttgggttggcgaaacttg |
4558376 |
T |
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| Q |
101 |
tcgggataacaaatgagggagatgtttcaactacaaaagttgttggtacatatggatatcttgctccagagtaagtaatgttcagtataattttttccgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4558375 |
tcgggataacaaatgagggagatgtttcaactacaaaagttgttggtacatatggatatcttgctccggagtaagtaatgttcagtataattttttccgt |
4558276 |
T |
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| Q |
201 |
tctaatttgttcatccttgatacatgt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4558275 |
tctaatttgttcatccttgatacatgt |
4558249 |
T |
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