View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9893_low_68 (Length: 222)

Name: NF9893_low_68
Description: NF9893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9893_low_68
NF9893_low_68
[»] chr3 (4 HSPs)
chr3 (19-206)||(33277757-33277942)
chr3 (21-150)||(52006155-52006285)
chr3 (14-150)||(39192552-39192687)
chr3 (110-150)||(39182779-39182819)
[»] chr2 (1 HSPs)
chr2 (20-206)||(3736974-3737160)
[»] chr1 (2 HSPs)
chr1 (19-188)||(38452341-38452511)
chr1 (19-165)||(42760531-42760678)
[»] chr4 (1 HSPs)
chr4 (20-161)||(22225620-22225760)
[»] chr8 (1 HSPs)
chr8 (19-195)||(15451046-15451224)
[»] chr5 (1 HSPs)
chr5 (166-206)||(28406186-28406226)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 33277942 - 33277757
Alignment:
Q  19 ggttaaggagcaataaataaatggattcactcaattaaagttaaaaataagtcaattaatgagaataattagaaacagttatatttaatatttgtaaatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  33277942 ggttaaggagcaataaataaatggattcactcaattaaagttaaaaataagtcaattaataagaataattagaaacagttgtatttaatatttgtaaatt 33277843  T
Q  119 tattttcctttacacggttatacaacacactcgcctcctttcctttgttttgtttgtgatttcaatttcactaattgtcccattatat 206  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33277842 tattttcctttaca--gttatacaacacactcgcctcctttcctttgttttgtttgtgatttcaatttcactaattgtcccattatat 33277757  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 52006155 - 52006285
Alignment:
Q  21 ttaaggagcaataaataaatggattcactcaattaaagttaaaaataagtcaattaatgagaataattagaaacagttatatttaatatttgt-aaattt 119  Q
    |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| | || ||||||    
T  52006155 ttaaggagcaataaataattggattccttcaattaaagttaaaaataagtcaattaatgagaataatttgaaatagttgtatttaatactcgtaaaattt 52006254  T
Q  120 attttcctttacacggttatacaacacactc 150  Q
     ||||||||||||||||||||| ||||||||    
T  52006255 cttttcctttacacggttatactacacactc 52006285  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 39192687 - 39192552
Alignment:
Q  14 gcataggttaaggagcaataaataaatggattcactcaattaaagttaaaaataagtcaattaatgagaataattagaaacagttatatttaatatttgt 113  Q
    |||| |||||||||||||||||||| || |||| |||||||||| || ||| ||||| ||||||||||||||||| ||||||||| ||||||||| ||||    
T  39192687 gcatcggttaaggagcaataaataattgaattccctcaattaaaatttaaa-taagttaattaatgagaataatttgaaacagttgtatttaatacttgt 39192589  T
Q  114 aaatttattttcctttacacggttatacaacacactc 150  Q
    ||| || ||||||||||||||||||||| ||||||||    
T  39192588 aaaattcttttcctttacacggttatactacacactc 39192552  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 39182819 - 39182779
Alignment:
Q  110 ttgtaaatttattttcctttacacggttatacaacacactc 150  Q
    ||||||| || ||||||||||||||||||||| ||||||||    
T  39182819 ttgtaaaattcttttcctttacacggttatactacacactc 39182779  T

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Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 3737160 - 3736974
Alignment:
Q  20 gttaaggagcaataaataaatggattcactcaattaaagttaaaaataagtcaattaatgagaataattagaaacagttatatttaatatttgtaaattt 119  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||    
T  3737160 gttaaggagcaataaataaatagattccctcaattaaagttaaaaataagtcaattaacgagaaaaattaaaaacagttatatttaatacttgtaaattt 3737061  T
Q  120 attttcctttacacggttatacaacacactcgcctcctttcctttgttttgtttgtgatttcaatttcactaattgtcccattatat 206  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  3737060 attttcctttacacgtttatacaacacactctcctcctttcctttgttttgtttatgatttcaatttcagtaattgtcccattatat 3736974  T

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Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 38452511 - 38452341
Alignment:
Q  19 ggttaaggagcaataaataaatggattcactcaattaaagttaaaaataagtcaattaatgagaataattagaaacagttatatttaatatttgt-aaat 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||||    
T  38452511 ggttaaggagcaataaataaatggattctctcaattaaagttaaaaataagtcaattaatgagaataattaaaaacagttgtatttaatacttgtaaaat 38452412  T
Q  118 ttattttcctttacacggttatacaacacactcgcctcctttcctttgttttgtttgtgatttcaatttca 188  Q
    || |||||||||||||| ||| |||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  38452411 ttcttttcctttacacgattacacaacacattcgtctcctttcctttattttgtttgtgatttcaatttca 38452341  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 42760531 - 42760678
Alignment:
Q  19 ggttaaggagcaataaataaatggattcactcaattaaagttaaaaataagtcaattaatgagaataattagaaacagttatatttaatatttgt-aaat 117  Q
    |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |||| ||||    
T  42760531 ggttaatgagcaataaataaatggattcccttaattaaagttaaaaataagtcaattgatgagaataattaaaaacagttgtatttaatacttgtaaaat 42760630  T
Q  118 ttattttcctttacacggttatacaacacactcgcctcctttcctttg 165  Q
    || ||||| |||||||| |||||||||||| |||||||||||||||||    
T  42760631 ttcttttcttttacacgattatacaacacattcgcctcctttcctttg 42760678  T

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Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 22225620 - 22225760
Alignment:
Q  20 gttaaggagcaataaataaatggattcactcaattaaagttaaaaataagtcaattaatgagaataattagaaacagttatatttaatatttgtaaattt 119  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  22225620 gttaaggagcaataaataaatggattccctcaactaaagttaaaaataaatcaattaatgagaataattagaaacagttgtatttaatacttgt-aattt 22225718  T
Q  120 attttcctttacacggttatacaacacactcgcctcctttcc 161  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22225719 attttcctttacacggttatacaacacactcgcctcctttcc 22225760  T

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Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 15451224 - 15451046
Alignment:
Q  19 ggttaaggagcaataaataaatggattcactcaattaaagttaa-aaataagtcaattaatgagaataattagaaacagttatatttaatatttgtaaa- 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||     
T  15451224 ggttaaggagcaataaataaatggattctctcaattaaagttattaaataagtcaattaatgagaataattaaaaatagttgtatttaatacttgtaaaa 15451125  T
Q  117 tttattttcctttacacggttatacaacacactcgcctcctttcctttgttttgtttgtgatttcaatttcactaattg 195  Q
    ||| ||||||||| |||| |||||||||||| |||||||||||||||| |||||||| |||||||||||| | ||||||    
T  15451124 tttcttttcctttgcacgattatacaacacattcgcctcctttcctttattttgtttttgatttcaattttagtaattg 15451046  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 28406186 - 28406226
Alignment:
Q  166 ttttgtttgtgatttcaatttcactaattgtcccattatat 206  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  28406186 ttttgtttgtgatttcaatttcagtaattgtcccattatat 28406226  T

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