View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9894_high_10 (Length: 307)
Name: NF9894_high_10
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_high_10 |
 | |
|
| [»] scaffold1613 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 24045116 - 24044835
Alignment:
| Q |
18 |
ataaccactcatcaccactactcatctcaacgtaacacccctctatattagtccctcaactatataccagagactaaattaatcttccaaataaaaatgt |
117 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24045116 |
ataaccactcatcatcactacgcatctcaacgtaacacccctctatattagtccctcaactatataccagagactaaattagtcttccaaataaaaatgt |
24045017 |
T |
|
| Q |
118 |
taaggactgatttgagtattg-nnnnnnngttaaagactacattaaattttgagacaaaattgtgtctctactcttattattttgagtataaaattaaag |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24045016 |
taaggactgatttgagtattgttttttttgttaaagactacattaaattttgagacaaaattgtgtctctactcttattattttgagtatacaattaaag |
24044917 |
T |
|
| Q |
217 |
atga--ctctaatnnnnnnnngatattgtttaaaacataaatatgcttttaaacacccaaaagtttataaatttatccctttg |
297 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24044916 |
atgactctctaat-aaaaaaagatattgtttaaaacataaatatgcttttaaacaccgaaaagtttataaatttatccctttg |
24044835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 24044726 - 24044762
Alignment:
| Q |
100 |
tcttccaaataaaaatgttaaggactgatttgagtat |
136 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24044726 |
tcttccaaataaaaatgttaaggactgatgtgagtat |
24044762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1613 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1613
Description:
Target: scaffold1613; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 869 - 913
Alignment:
| Q |
18 |
ataaccactcatcaccactactcatctcaacgtaacacccctcta |
62 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
869 |
ataaccactcatcgtcactactcatcccaacgtaacacccctcta |
913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 38544590 - 38544634
Alignment:
| Q |
18 |
ataaccactcatcaccactactcatctcaacgtaacacccctcta |
62 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
38544590 |
ataaccactcatcgtcactactcatcccaacgtaacacccctcta |
38544634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University