View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_high_13 (Length: 254)
Name: NF9894_high_13
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 11400595 - 11400798
Alignment:
| Q |
6 |
actctgttgatgtaattcactctcttgacttgtgttgtgtttttgatttgatggaaaaagtgaatgttgaacattttataagtgagatgacatataaact |
105 |
Q |
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| T |
11400595 |
actctgttgatgtaattcactctcttgacttgtgttgtgtttttgatttgatggaaaaagtgaatgttgaacattttataagtgagatgacatataaact |
11400694 |
T |
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| Q |
106 |
taatatcttaagg--ttgagttaaagtgcggcatctctctcactttatatgattgttcaaggtccggtcctcatgagtcatgacccaactcttccttatg |
203 |
Q |
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| T |
11400695 |
taatgtcttaaggttttgagttaaagtgcggcatctctctcac-ttatatgattgttcaaggtccggtcctcatgagtcatgacccaactcttccttatg |
11400793 |
T |
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| Q |
204 |
ccaag |
208 |
Q |
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||||| |
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| T |
11400794 |
ccaag |
11400798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 3609514 - 3609574
Alignment:
| Q |
60 |
aaaaagtgaatgttgaacattttataagtgagatgacatataaacttaatatcttaaggtt |
120 |
Q |
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| T |
3609514 |
aaaaagtgaatggtgaaccctttataagtgagataacctataaacttaatgtgttaaggtt |
3609574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 11400889 - 11400921
Alignment:
| Q |
209 |
tgtttttctacatcagcaccgcaagctatgcct |
241 |
Q |
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| T |
11400889 |
tgtttttctacatcagcaccgcaagctatgcct |
11400921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 18091073 - 18091133
Alignment:
| Q |
60 |
aaaaagtgaatgttgaacattttataagtgagatgacatataaacttaatatcttaaggtt |
120 |
Q |
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| T |
18091073 |
aaaaaatgaatgttgaatattttatatgtgagatgacctataaacctaatatcttaaggtt |
18091133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 44358195 - 44358148
Alignment:
| Q |
60 |
aaaaagtgaatgttgaacattttataagtgagatgacatataaactta |
107 |
Q |
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| T |
44358195 |
aaaaagtgaatgttgaccattttataagtgagatgactcataaactta |
44358148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 8794152 - 8794204
Alignment:
| Q |
68 |
aatgttgaacattttataagtgagatgacatataaacttaatatcttaaggtt |
120 |
Q |
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| T |
8794152 |
aatgttgaacatcttataagtaagaggactcataaacctaatatcttaaggtt |
8794204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 1475317 - 1475275
Alignment:
| Q |
61 |
aaaagtgaatgttgaacattttataagtgagatgacatataaa |
103 |
Q |
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| T |
1475317 |
aaaagtgaatgttgaacattttataagtgaaaggacctataaa |
1475275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 32930731 - 32930775
Alignment:
| Q |
71 |
gttgaacattttataagtgagatgacatataaacttaatatctta |
115 |
Q |
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| T |
32930731 |
gttgaacattttataagtgagatgactcataaactcaatgtctta |
32930775 |
T |
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