View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9894_high_14 (Length: 247)
Name: NF9894_high_14
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 34469293 - 34469084
Alignment:
| Q |
19 |
ctttcttccatcaaaacgttgttattacaaaagacatttccattgcaaaacggtatgatcctttctttcatctatatgttgtaagggttgtatgcgcgta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34469293 |
ctttcttccatcaaaacgttgttattacaaaagacatttccattgcaaaacggtatgatcctttctttcatctatatgttgtaagggttgtatgctcgta |
34469194 |
T |
|
| Q |
119 |
tgaagaaaaagaacaaagttgagaaactcatagtgtatcattggtttcttcccttttctaatgttggatttttataatttcactttatatttgttgttta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34469193 |
tgaagaaaaagaacaaagttgagaaactcatagtgtatcattgat---ttcccttttctaatgttggatttttataatttcactttatatttgttgttta |
34469097 |
T |
|
| Q |
219 |
atctgtttacctt |
231 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34469096 |
atctgtttacctt |
34469084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 27624357 - 27624257
Alignment:
| Q |
52 |
acatttccattgcaaaacggtatgatcctttctttcatctatatgttgtaagggttgtatgcgcgtatgaagaaaaagaacaaagttgagaaactcatag |
151 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| | ||||||||||| |||| |||||||||| ||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
27624357 |
acatttccattgcaaaaaggtatgacccttttctccatctatatgtcgtaatggttgtatgctggtatgaagaaaaagaactgaattgaggaactcatag |
27624258 |
T |
|
| Q |
152 |
t |
152 |
Q |
| |
|
| |
|
|
| T |
27624257 |
t |
27624257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 34488879 - 34488830
Alignment:
| Q |
179 |
atgttggatttttataatttcactttatatttgttgtttaatctgtttac |
228 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
34488879 |
atgttggtttttgataatttcattttatatttgttgtttgatctgtttac |
34488830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 34486871 - 34486811
Alignment:
| Q |
88 |
atctatatgttgtaagggttgtatgcgcgtatgaagaaaaagaacaaagttgagaaactca |
148 |
Q |
| |
|
||||||||| ||||| || |||||| |||||||||||||||| ||||||||| |||||| |
|
|
| T |
34486871 |
atctatatgatgtaatggcggtatgctggtatgaagaaaaagaataaagttgaggaactca |
34486811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University