View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_high_16 (Length: 243)
Name: NF9894_high_16
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 68 - 237
Target Start/End: Complemental strand, 434316 - 434147
Alignment:
| Q |
68 |
ttccctcaggtagctttaatctcctggcaaaattggaattttcttcctcttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtc |
167 |
Q |
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| T |
434316 |
ttccctcagggagctttaatctcctggcaaaagtggaattttcttccacttgacccaagatgacagatttatgattaagacagtcaaaaaatccgaagtc |
434217 |
T |
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| Q |
168 |
aaggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtatgatgtccatct |
237 |
Q |
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| T |
434216 |
aaggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtataatgtacatct |
434147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 32938459 - 32938626
Alignment:
| Q |
70 |
ccctcaggtagctttaatctcctggcaaaattggaattttcttcctcttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtcaa |
169 |
Q |
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| T |
32938459 |
ccctcagggagctttcatctcctggcaaaagtggaagcttcttctacttgacccaagatgatagatttatgataaagacggtgaaaaaatccgaagtcaa |
32938558 |
T |
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| Q |
170 |
ggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtatgatgtccatct |
237 |
Q |
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| T |
32938559 |
ggtttgtttttggttgttaaattgaaaacatttttccatgtttgttcaaactagtatgacgtacatct |
32938626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 434380 - 434350
Alignment:
| Q |
41 |
aagttcttttacaattgaggaagccatttcc |
71 |
Q |
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| T |
434380 |
aagttcttttacaattgaggaagccatttcc |
434350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 24524402 - 24524459
Alignment:
| Q |
116 |
cttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtcaaggtt |
173 |
Q |
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| T |
24524402 |
cttgacccaagatgacagattcatgattaagacagtgaagaaatctgaagtcaaggtt |
24524459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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