View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9894_high_17 (Length: 229)
Name: NF9894_high_17
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_high_17 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 434834 - 434606
Alignment:
| Q |
1 |
tcatggatctcattttaagattaggg-ttttcgttgtcttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttcagttaa |
99 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
434834 |
tcatggatctcattt-aagattagggattttcgtcgtcttccaatttcatggatgtcgcccagattttcaaaggtagtttttcgcgtttgcttcagttaa |
434736 |
T |
|
| Q |
100 |
ttagtgtttttgttagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattg |
199 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
434735 |
ttagtgtttttgtgagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattg |
434636 |
T |
|
| Q |
200 |
acttcgactcattgaatacaagggattcaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
434635 |
acttcgactcattgaatacaagggattcaa |
434606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 17512681 - 17512754
Alignment:
| Q |
37 |
cttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttcagttaattagtgttttt |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
17512681 |
cttccaatttcatggatgtcgcctagattttcaaatgtagtttttcgcgtttgtttcagttagttattgttttt |
17512754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 17512780 - 17512893
Alignment:
| Q |
116 |
aattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattgacttcgactcattgaa |
215 |
Q |
| |
|
|||| ||||| |||||| |||||||| || | |||||||||||||| | | |||||| |||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
17512780 |
aattgaattcaattcatttaagattagggcttcaaattcataaattctacgattagttgtacctttgtcattgagtctcaattgattttaacttattgaa |
17512879 |
T |
|
| Q |
216 |
tacaagggattcaa |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17512880 |
gccaagggattcaa |
17512893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University