View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_high_4 (Length: 451)
Name: NF9894_high_4
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 32 - 435
Target Start/End: Original strand, 50117695 - 50118098
Alignment:
| Q |
32 |
tatattgatatggaagaggcatatgattggttcatatagaggttttctttaagattttagtgaaaaaagcctagaagtagaaaggagatcagaactttga |
131 |
Q |
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| T |
50117695 |
tatattgatatggaagaggcatatgattggttcatatagaggttttctttaagattttagtgaaaaaagcctagaagtagaaaggagatcagaactttga |
50117794 |
T |
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| Q |
132 |
attgcttatatgttctatctaaccagttgaataagatagtacaatacaaggggatcatgactagccagtagcgtgaaagtacagtgtgaaggatacaaat |
231 |
Q |
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| T |
50117795 |
attgcttatatgttatatctaaccagttgaataagatagtacaatacaaggggatcatgactagccagtagcgtgaaagtacagtgtgaaggatacaaat |
50117894 |
T |
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| Q |
232 |
ggtttccctataactaaaggtttgcatgaaaagtgaactttttcaatttatctatggtagaaaatttaaaatctgatgtaaaatttaaaccgcctgattt |
331 |
Q |
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| T |
50117895 |
ggtttccctataactaaaggtttgcatgaaaagtgaactttttcgatttatctatggtagaaaatttaaaatctgatgtaaaatttaaaccgcctgattt |
50117994 |
T |
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| Q |
332 |
tgattgaatatggtagaaagtatggaagaatatggtggattggttgtagccgcagcaatacaacattggctttggattagttataactcttctatggttc |
431 |
Q |
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| T |
50117995 |
tgattgaatatggtagaaagtatggaagaatatggtggattggttgtagccgcagcaatacaacaatggctttggattagttataactcttctatggttc |
50118094 |
T |
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| Q |
432 |
aaat |
435 |
Q |
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| T |
50118095 |
aaat |
50118098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 50117615 - 50117651
Alignment:
| Q |
1 |
gtcacaagttattttccaacatcagcatgcatatatt |
37 |
Q |
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| T |
50117615 |
gtcacaagttattttccaacatcagcatgcatctatt |
50117651 |
T |
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