View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_high_6 (Length: 392)
Name: NF9894_high_6
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 22 - 371
Target Start/End: Original strand, 15686907 - 15687256
Alignment:
| Q |
22 |
gtactaaaaaatgtctagttataaatataaatttctacctgcatcatgtcaccgaggttaacgaccaaagcgccaggaatcggtgtgacatcaacccact |
121 |
Q |
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| T |
15686907 |
gtactaaaaaatgtctagttataaatataaatttctacctgcatcatgtcaccgaggttaacgaccaaagcgccaggaatcggtgtgacatcaacccact |
15687006 |
T |
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| Q |
122 |
gattttcatgggaaacttggaggccaccaagttgatcttgtaagagaacagtgaggaagctactgtcagaatgagcactagcaccaatagtcaattcagg |
221 |
Q |
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| T |
15687007 |
gattttcatggaaaacttggaggccaccaagttgatcttgtaagagaacagtgaggaagctactgtcagaatgagcactagcaccaatagtcaattcagg |
15687106 |
T |
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| Q |
222 |
ctcagggcaaggtgggtaataatgggaaattaggaaaaggccttctacacaatctatgtctttaaggtaattggaattgaggcctaatgcttcagaaagc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15687107 |
ctcagggcaaggtgggtaataatgggaaattaggaaaaggccttctacacaatctatgtctttaaggtaattggaattgaggcctaatgcttctgaaagc |
15687206 |
T |
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| Q |
322 |
aattcaaataaaatcgtccccactttcttaacatactcagagtacgtcgt |
371 |
Q |
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| T |
15687207 |
aattcaaataaaatcgtccccactttcttaacatactcagagtacgtcgt |
15687256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 50 - 366
Target Start/End: Original strand, 15681095 - 15681411
Alignment:
| Q |
50 |
aaatttctacctgcatcatgtcaccgaggttaacgaccaaagcgccaggaatcggtgtgacatcaacccactgattttcatgggaaacttggaggccacc |
149 |
Q |
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| T |
15681095 |
aaatttttacctgcatcatgtcaccgaggttaatgaccagagcgccaggaatcggtgtgacatcaacccactgatttccatggaaaacttggaggccacc |
15681194 |
T |
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| Q |
150 |
aagttgatcttgtaagagaacagtgaggaagctactgtcagaatgagcactagcaccaatagtcaattcaggctcagggcaaggtgggtaataatgggaa |
249 |
Q |
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| T |
15681195 |
aagttgatcttgtaagagaacagtaaagaaactactgtcagaatgagcacttgtgccaaaagtgagttctggctcagggcaaggtgggtaataatgggaa |
15681294 |
T |
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| Q |
250 |
attaggaaaaggccttctacacaatctatgtctttaaggtaattggaattgaggcctaatgcttcagaaagcaattcaaataaaatcgtccccactttct |
349 |
Q |
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| T |
15681295 |
attaggaaaagtccttctgcacaatctatgtctttaaggtaattggaattaaggcctaatgcttcagaaagcaattcaagcagaatcatccccactttgt |
15681394 |
T |
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| Q |
350 |
taacatactcagagtac |
366 |
Q |
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| T |
15681395 |
tgacatagtcagagtac |
15681411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 3193291 - 3193365
Alignment:
| Q |
285 |
aaggtaattggaattgaggcctaatgcttcagaaagcaattcaaataaaatcgtccccactttcttaacatactc |
359 |
Q |
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||||||| ||||||||||||||||||| ||| ||||||||||||| | |||| ||||| | || |||||||||| |
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| T |
3193291 |
aaggtaactggaattgaggcctaatgcatcataaagcaattcaaacagaatcatcccccttgtcctaacatactc |
3193365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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