View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_high_7 (Length: 358)
Name: NF9894_high_7
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 51767600 - 51767946
Alignment:
| Q |
1 |
ttgaaactttaaatgaatggtcaaattttctacaccatattttcttttatttgttgcatattgcatattcacatgtcagtggtgtatgttgcctaccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51767600 |
ttgaaactttaaatgaatggtcaaattttctacaccatattttcttttatttgttgcatattgcatattcacatgtcagtggtgtatgttgcctaccaaa |
51767699 |
T |
|
| Q |
101 |
agtttaagaagttatggaatctcagatatcagttggtcaaacatggaaaccattttacctttttctttattaccctatcacaagataatttagagaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51767700 |
agtttaagaagttatggaatctcagatatcagttggtcaaacatggaaaccattttacctttttctttattaccctatcacaagataatttagagaactt |
51767799 |
T |
|
| Q |
201 |
accatatcataaagttagaattccagatcataaagctctggtgattcatctccagttacaaaagcatgcgtagttcaaaagtatttcattctttactttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51767800 |
accatatcataaagttagaattccagatcataaagctctggtgattcatctccagttacaaaagcatgcgtagttcaaaagtatttcattctttactttt |
51767899 |
T |
|
| Q |
301 |
tctggtataatttccttatacttgggggatagcaagccaatacacca |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51767900 |
tctggtataatttccttatacttgggggatagcaagccaatacacca |
51767946 |
T |
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