View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_high_9 (Length: 344)
Name: NF9894_high_9
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 40841963 - 40841635
Alignment:
| Q |
1 |
ggaataaagtgttggaatttttgaagttggacgacaatgactgtgcagtactcaatggtgatgttgcagaagatatattgaaagaaaagctaaaattgtt |
100 |
Q |
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| T |
40841963 |
ggaataaagtgttggaatttttgaagttggacaacaatgactgtgcggcactgaatggtgatgttgcagaagatatattgaaagaaaagctaaaattgtt |
40841864 |
T |
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| Q |
101 |
caacaagcaatttgaagagttcagtccaattggtttgtatatgataagaagcttaaagaagaaataataatatcagtggcaaataccttgctgccagtat |
200 |
Q |
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| T |
40841863 |
caacaagcaatttgaagagttcagtccaattggtttgtatatgataagaagcttaaagaagaaataataatatcagtggcaaataccttgctgccagtat |
40841764 |
T |
|
| Q |
201 |
atggaatctttattgggaggttccgtgattgtcttggtattcatgctaatcagtatattagatacggaatgtttgagattcaagatcgcctcaacaactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841763 |
atggaatctttattgggaggttccgtgattgtcttggtattcatgctaatcagtgtattagatacggaatgtttgagattcaagatcgcctcaacaactt |
40841664 |
T |
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| Q |
301 |
gtttctgatcaaaaacagttagttgaatc |
329 |
Q |
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| T |
40841663 |
gtttctgatcaaaaacagttagttgaatc |
40841635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 31474386 - 31474066
Alignment:
| Q |
18 |
tttttgaagttggacgacaatgactgtgcagtactcaatggtgatgttgcagaagatatattgaaagaaaagctaaaattgttcaacaagcaatttgaag |
117 |
Q |
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||||||||||||||| ||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31474386 |
tttttgaagttggacaacaatgactatgcggcactcaatgacgatgttgcagaagatatattgaaagaaaagctaaaattgttcaacaagcaatttgaag |
31474287 |
T |
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| Q |
118 |
ag----------ttcagtccaattggtttgtatatgataagaagcttaaagaagaaataataatatcagtggcaaataccttgctgccagtatatggaat |
207 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31474286 |
agatgtacagagttcagtccaattggtttgtatatgataagaagcttaaggaagaaataataatatcagtgggaaataccttgctgccagtatatggaat |
31474187 |
T |
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| Q |
208 |
ctttattgggaggttccgtgattgtcttggtattcatgctaatcagtatattagatacggaatgtttgagattcaagatcgcctcaacaacttgtttctg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
31474186 |
ctttattgggaggttccgtgattgtcttggtattcatgcaaatcagtatattagatatggaatgtttgagattcaagatcgccttaacaatttgtttctg |
31474087 |
T |
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| Q |
308 |
atcaaaaacagttagttgaat |
328 |
Q |
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|| ||||||||||||| |||| |
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| T |
31474086 |
atgaaaaacagttagtagaat |
31474066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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