View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9894_low_1 (Length: 931)
Name: NF9894_low_1
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9894_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 667 - 912
Target Start/End: Original strand, 36211626 - 36211871
Alignment:
| Q |
667 |
taatgaattgattgttttgatcactacacctcattgaccttgcatccaatgttagtctttccatcctcttttaataacaccagtcttaatcatcttcaca |
766 |
Q |
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| T |
36211626 |
taatgaattgattgttttgatcactacacctcattgaccttgcatccaatgttagtctttccatcctcttttaataacaccagtcttaatcatcttcaca |
36211725 |
T |
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| Q |
767 |
ccattgtatcaaccattgtattaaaaccatgacagtaaaatatctgttttttctaaacgtctatgtacatcaaacatgccctttccattcctccattaca |
866 |
Q |
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| T |
36211726 |
ccattgtatcaaccattgtcttaaaaccatgacagtaaaatatctgttttttctaaacgtctatgtacgtcaaacatgccctttccattcctccattaca |
36211825 |
T |
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| Q |
867 |
ccaataaatccaccgtctattgcctctaattacatcaaggcagtga |
912 |
Q |
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| T |
36211826 |
ccaataaatccaccgtctattgcctctaattacatcaaggcagtga |
36211871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 296 - 554
Target Start/End: Original strand, 36211363 - 36211627
Alignment:
| Q |
296 |
actcccatactgggaatatatctcggcaaataagacatttctcaattgttgaaaatggtttcctcgatattgctttatccctaagtccaaaagtgtgaga |
395 |
Q |
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| T |
36211363 |
actcccatactgggaatatatctcggcaaataagacatttctcaattgttgaaaatggtttactcgatattgctttatccctaagtccaaaagtgtgaga |
36211462 |
T |
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| Q |
396 |
actatactattttccatcaaaggagtggctattggcagtgaatc------agatgcatggatattaagatacaaatacttatgaagtttagatttaagtg |
489 |
Q |
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| T |
36211463 |
actatactattttccatcaaaggagtgggtattggcagtgaatcaatgttagatgcatggatattaagatacaaatacttatcaagtttagatttaagtg |
36211562 |
T |
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| Q |
490 |
atactctgtttgtgactctacctaattcaattgtcaaattggagtatctgcatgtcagataacta |
554 |
Q |
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| T |
36211563 |
atactctgtttgtgactctacctaattcaattgtcaaattggagtatctgcatgtcagataacta |
36211627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 60 - 270
Target Start/End: Original strand, 36211138 - 36211349
Alignment:
| Q |
60 |
ttatccaaaggattttggtgtcactactgttcaactcattaaacaaagatggaaattaaagtccggagaatattgcaagagattatgtcgaagaactact |
159 |
Q |
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| T |
36211138 |
ttatccaaaggattttggcgtcactactgttcaactcattaaacaaagatggaaattaaagtccggagaatattgcaagagattatgtcgaagaactact |
36211237 |
T |
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| Q |
160 |
a-cagtcgaggtcatttcttcaagatttttaggattttggccatttctaatatttcaaagtacacgatttcgtgcatgatctcgcactctatgttgcaaa |
258 |
Q |
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| T |
36211238 |
aacagtcgaggtcatttcttcaagatttttaggattttggccatttctaatatttcaaagtacacgatttcgtgcatgatctcgcactctattttgcaaa |
36211337 |
T |
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| Q |
259 |
agataagtgtgt |
270 |
Q |
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| T |
36211338 |
agatgagtgtgt |
36211349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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