View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9894_low_11 (Length: 353)

Name: NF9894_low_11
Description: NF9894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9894_low_11
NF9894_low_11
[»] chr7 (19 HSPs)
chr7 (35-165)||(24044598-24044726)
chr7 (268-353)||(24044772-24044856)
chr7 (209-262)||(28110019-28110072)
chr7 (260-304)||(19426579-19426623)
chr7 (260-300)||(33223557-33223597)
chr7 (267-303)||(41080126-41080162)
chr7 (267-304)||(4971289-4971326)
chr7 (267-304)||(12141898-12141935)
chr7 (267-304)||(24700120-24700157)
chr7 (267-304)||(27164872-27164909)
chr7 (267-304)||(37856189-37856226)
chr7 (267-304)||(41985124-41985161)
chr7 (267-303)||(2347094-2347130)
chr7 (267-303)||(29162314-29162350)
chr7 (260-304)||(32919008-32919052)
chr7 (267-303)||(33050183-33050219)
chr7 (260-304)||(38096467-38096511)
chr7 (270-302)||(38218378-38218410)
chr7 (267-303)||(44175545-44175581)
[»] chr6 (13 HSPs)
chr6 (260-304)||(15722531-15722575)
chr6 (260-304)||(30714679-30714723)
chr6 (267-304)||(3180027-3180064)
chr6 (267-304)||(3339534-3339571)
chr6 (209-262)||(9188900-9188953)
chr6 (209-262)||(12044394-12044447)
chr6 (267-304)||(30945822-30945859)
chr6 (267-303)||(7611495-7611531)
chr6 (260-304)||(9954547-9954591)
chr6 (260-304)||(11785354-11785398)
chr6 (260-304)||(22492055-22492099)
chr6 (260-304)||(28965868-28965912)
chr6 (209-265)||(30733070-30733126)
[»] chr4 (31 HSPs)
chr4 (260-304)||(9162065-9162109)
chr4 (209-262)||(52456883-52456936)
chr4 (260-303)||(169530-169573)
chr4 (260-303)||(15596396-15596439)
chr4 (264-303)||(30042134-30042173)
chr4 (260-303)||(39010165-39010208)
chr4 (262-304)||(51717312-51717354)
chr4 (267-304)||(3222988-3223025)
chr4 (209-262)||(9827939-9827992)
chr4 (267-304)||(15638160-15638197)
chr4 (267-304)||(23094375-23094412)
chr4 (209-262)||(26440727-26440780)
chr4 (267-304)||(31221412-31221449)
chr4 (267-304)||(38864771-38864808)
chr4 (267-304)||(41262653-41262690)
chr4 (267-304)||(44368237-44368274)
chr4 (209-262)||(45274327-45274380)
chr4 (275-304)||(48783809-48783838)
chr4 (267-304)||(51359825-51359862)
chr4 (267-304)||(54036553-54036590)
chr4 (209-262)||(54801060-54801113)
chr4 (267-303)||(3078943-3078979)
chr4 (260-304)||(4896528-4896572)
chr4 (260-304)||(6290461-6290505)
chr4 (267-303)||(9032780-9032816)
chr4 (267-303)||(12387689-12387725)
chr4 (267-303)||(32365691-32365727)
chr4 (260-304)||(34116568-34116612)
chr4 (268-304)||(34259814-34259850)
chr4 (260-304)||(47998593-47998637)
chr4 (260-304)||(51296217-51296261)
[»] chr8 (21 HSPs)
chr8 (260-303)||(7596919-7596962)
chr8 (260-303)||(21273738-21273781)
chr8 (267-304)||(36064029-36064066)
chr8 (260-304)||(11223887-11223931)
chr8 (260-304)||(22852867-22852911)
chr8 (267-302)||(6806909-6806944)
chr8 (264-295)||(24319348-24319379)
chr8 (267-300)||(14710917-14710950)
chr8 (267-304)||(17775464-17775501)
chr8 (267-304)||(40413373-40413410)
chr8 (267-304)||(42443103-42443140)
chr8 (159-236)||(43873592-43873672)
chr8 (267-303)||(13884195-13884231)
chr8 (260-304)||(26294188-26294232)
chr8 (260-304)||(26307445-26307489)
chr8 (267-303)||(30112835-30112871)
chr8 (260-304)||(34970206-34970250)
chr8 (267-303)||(38844825-38844861)
chr8 (260-304)||(39021471-39021515)
chr8 (262-302)||(39719278-39719318)
chr8 (260-304)||(45101395-45101439)
[»] chr2 (12 HSPs)
chr2 (267-304)||(22353199-22353236)
chr2 (209-262)||(17999808-17999861)
chr2 (267-304)||(27307266-27307303)
chr2 (267-304)||(29795446-29795483)
chr2 (267-304)||(36909878-36909915)
chr2 (267-303)||(3196122-3196158)
chr2 (260-304)||(4738600-4738644)
chr2 (260-304)||(11229349-11229393)
chr2 (260-304)||(18373846-18373890)
chr2 (267-303)||(21805821-21805857)
chr2 (260-304)||(31296873-31296917)
chr2 (260-304)||(33296099-33296143)
[»] chr1 (21 HSPs)
chr1 (267-304)||(50797790-50797827)
chr1 (267-303)||(16836139-16836175)
chr1 (265-304)||(40612113-40612152)
chr1 (267-302)||(52714979-52715014)
chr1 (270-304)||(44517988-44518022)
chr1 (267-304)||(1690445-1690482)
chr1 (267-304)||(9011644-9011681)
chr1 (267-304)||(19442505-19442542)
chr1 (267-304)||(27687543-27687580)
chr1 (267-304)||(40596078-40596115)
chr1 (267-304)||(42256459-42256496)
chr1 (260-304)||(8934624-8934668)
chr1 (260-304)||(11812386-11812430)
chr1 (260-304)||(31427985-31428029)
chr1 (260-304)||(39669805-39669849)
chr1 (267-303)||(40238438-40238474)
chr1 (267-303)||(41507218-41507254)
chr1 (260-304)||(44672058-44672102)
chr1 (260-304)||(50226907-50226951)
chr1 (267-303)||(50528092-50528128)
chr1 (260-304)||(52669796-52669840)
[»] scaffold0592 (1 HSPs)
scaffold0592 (264-304)||(8339-8379)
[»] chr5 (17 HSPs)
chr5 (260-304)||(26660439-26660483)
chr5 (260-304)||(26932031-26932075)
chr5 (267-303)||(27440479-27440515)
chr5 (260-304)||(36713206-36713250)
chr5 (260-303)||(19127124-19127167)
chr5 (260-309)||(3771034-3771083)
chr5 (267-304)||(3960204-3960241)
chr5 (267-304)||(14914371-14914408)
chr5 (262-303)||(42699057-42699098)
chr5 (267-303)||(3109622-3109658)
chr5 (209-262)||(10469901-10469956)
chr5 (260-304)||(11768018-11768062)
chr5 (260-304)||(14323996-14324040)
chr5 (267-303)||(16143390-16143426)
chr5 (267-303)||(17063865-17063901)
chr5 (260-304)||(23991162-23991206)
chr5 (260-304)||(38500942-38500986)
[»] chr3 (22 HSPs)
chr3 (260-304)||(48945846-48945890)
chr3 (260-304)||(55344324-55344368)
chr3 (265-304)||(3958051-3958090)
chr3 (260-303)||(20380917-20380960)
chr3 (260-302)||(31206879-31206921)
chr3 (267-304)||(7249-7286)
chr3 (267-304)||(1765403-1765440)
chr3 (267-304)||(8254026-8254063)
chr3 (267-304)||(34021498-34021535)
chr3 (267-304)||(35074125-35074162)
chr3 (267-304)||(43169777-43169814)
chr3 (267-304)||(47683800-47683837)
chr3 (267-304)||(48405409-48405446)
chr3 (267-304)||(49196695-49196732)
chr3 (267-304)||(52454129-52454166)
chr3 (267-303)||(462436-462472)
chr3 (267-303)||(11327108-11327144)
chr3 (260-304)||(18169156-18169200)
chr3 (267-303)||(23163192-23163228)
chr3 (260-304)||(30796642-30796686)
chr3 (210-262)||(34733248-34733300)
chr3 (260-304)||(43333698-43333742)
[»] scaffold0011 (1 HSPs)
scaffold0011 (260-304)||(219692-219736)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 24044598 - 24044726
Alignment:
Q  35 tcaatattcctttgatgaccatttagtgtgaacaacttcagaatattacaagcattgacgaaggagataacaaaagctgtgtcgaagaatcattctatac 134  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  24044598 tcaacattcctttgatgaccatttactgtgaacaacttcagaatattacaagcattgacgaaggagatgacaaaagctgtgtcgaagaatcattctata- 24044696  T
Q  135 tagattctaaagagttaaactcaggagtagt 165  Q
     ||||||||||| ||||||||| ||||||||    
T  24044697 -agattctaaagggttaaactctggagtagt 24044726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 24044772 - 24044856
Alignment:
Q  268 agttgtcacaaaatgattgtacaaatatgatttctctgaactcagctaagtttctctnnnnnnncaaagggataaatttataaact 353  Q
    |||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||       ||||||||||||||||||||||    
T  24044772 agttgtcacaaaataattgtacaaatatcatttctataaactcagctaagtttctct-aaaaaacaaagggataaatttataaact 24044856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 28110072 - 28110019
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgt 262  Q
    |||||||||||| |||| ||||||||||||  ||| ||||||||||||||||||    
T  28110072 attggtcaaaaacaatggagagagaaaatgaaagagagaataaaaatataatgt 28110019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 19426623 - 19426579
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||    
T  19426623 tgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctct 19426579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 33223557 - 33223597
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgattt 300  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  33223557 tgtcaagaagttgtcacaaaatggttgtacaaatatcattt 33223597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 41080162 - 41080126
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||||||||||||||||||| |||||||    
T  41080162 aagttgtcacaaaatgattgtacaaatatcatttctc 41080126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 4971326 - 4971289
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  4971326 aagttgtcacaaaatggttgtacaaatatcatttctct 4971289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 12141935 - 12141898
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  12141935 aagttatcacaaaatggttgtacaaatatgatttctct 12141898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 24700157 - 24700120
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  24700157 aagttgttacaaaatgattgtacaaatatcatttctct 24700120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 27164872 - 27164909
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  27164872 aagttgtcacaaattgattgtacaaatatcatttctct 27164909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 37856189 - 37856226
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  37856189 aagttgtcacaaaatggttgtacaaatatcatttctct 37856226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 41985124 - 41985161
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  41985124 aagttgtcacaaattgattgtacaaatatcatttctct 41985161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 2347094 - 2347130
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||| |||||||||||| |||||||    
T  2347094 aagttgtcacaaaatggttgtacaaatatcatttctc 2347130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 29162314 - 29162350
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  29162314 aagttgtcacaaattgattgtacaaatatcatttctc 29162350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 32919008 - 32919052
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| || ||||||||||||||||||| |||||| ||||||||    
T  32919008 tgtcaaaaaattgtcacaaaatgattgtataaatatcatttctct 32919052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 33050219 - 33050183
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||| |||||||||||| |||||||    
T  33050219 aagttgtcacaaaatggttgtacaaatatcatttctc 33050183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 38096467 - 38096511
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| || ||||||||||||| |||||||||||| ||||||||    
T  38096467 tgtcaaaaaattgtcacaaaatggttgtacaaatattatttctct 38096511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 38218378 - 38218410
Alignment:
Q  270 ttgtcacaaaatgattgtacaaatatgatttct 302  Q
    |||||||||||||||||||||||||| ||||||    
T  38218378 ttgtcacaaaatgattgtacaaatatcatttct 38218410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 44175581 - 44175545
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  44175581 aagttatcacaaaatgattgtacaaatattatttctc 44175545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 15722531 - 15722575
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||    
T  15722531 tgtcaaaaagttgtcacaaaatgattgtacaaatatcatttctct 15722575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 30714723 - 30714679
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||||    
T  30714723 tgtcaaaaagctgtcacaaaatgattgtacaaatatcatttctct 30714679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 3180027 - 3180064
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  3180027 aagttgtcaaaaaatgattgtacaaatatcatttctct 3180064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 3339534 - 3339571
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  3339534 aagttgtcacaaaatggttgtacaaatatcatttctct 3339571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 9188900 - 9188953
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgt 262  Q
    ||||||||||||||||| |||||||||| || ||| ||| ||| ||||||||||    
T  9188900 attggtcaaaaataatggagagagaaaaaggaagagagagtaagaatataatgt 9188953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 12044447 - 12044394
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgt 262  Q
    |||||||||||| |||| |||||||||| || ||| ||| ||||||||||||||    
T  12044447 attggtcaaaaacaatggagagagaaaaaggaagagagagtaaaaatataatgt 12044394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 30945859 - 30945822
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  30945859 aagttgtcacaaaatgattgtataaatatcatttctct 30945822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 7611531 - 7611495
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  7611531 aagttgtcacaaaatgattgttcaaatatcatttctc 7611495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 9954591 - 9954547
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  9954591 tgtcaaaaagttgtcacaaattggttgtacaaatatcatttctct 9954547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 11785398 - 11785354
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| || ||||||||||||| |||||||||||| ||||||||    
T  11785398 tgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctct 11785354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 22492055 - 22492099
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||| |||||||||| ||||||| |||| ||||||||    
T  22492055 tgtcaagaagttatcacaaaatggttgtacatatatcatttctct 22492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 28965868 - 28965912
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||| |||||||| |||||||||||| ||||||||    
T  28965868 tgtcaaaaagttgtaacaaaatggttgtacaaatatcatttctct 28965912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 30733126 - 30733070
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgtcaa 265  Q
    ||||||||||| ||||  ||||||||||  | ||| |||||||||||||||||||||    
T  30733126 attggtcaaaagtaatagagagagaaaaatgaagagagaataaaaatataatgtcaa 30733070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 9162109 - 9162065
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||    
T  9162109 tgtcaaaaagttgtcacaaaatgattgtacaaatatcatttctct 9162065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 52456883 - 52456936
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgt 262  Q
    ||||||||||||||||| |||||||||| || ||| ||| ||||||||||||||    
T  52456883 attggtcaaaaataatgtagagagaaaaaggaagagagagtaaaaatataatgt 52456936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 169530 - 169573
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||| |||||||||||||||| |||||||||||| |||||||    
T  169530 tgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 15596439 - 15596396
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||||||| || |||||||||||| |||||||    
T  15596439 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctc 15596396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 30042173 - 30042134
Alignment:
Q  264 aagaagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  30042173 aagaagttgtcacaaaatggttgtacaaatatcatttctc 30042134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 39010165 - 39010208
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||| |||||||||||||||| |||||||||||| |||||||    
T  39010165 tgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 39010208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 51717312 - 51717354
Alignment:
Q  262 tcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||| || |||||||||||| ||||||||    
T  51717312 tcaagaagttgtcacaaattggttgtacaaatatcatttctct 51717354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 3223025 - 3222988
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  3223025 aagttgtcacaaattgattgtacaaatatcatttctct 3222988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 9827939 - 9827992
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgt 262  Q
    |||||||||||| |||| |||||||||| | |||| |||||||||| |||||||    
T  9827939 attggtcaaaaacaatggagagagaaaaagatagagagaataaaaacataatgt 9827992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 15638197 - 15638160
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  15638197 aagttgtcaaaaaatgattgtacaaatatcatttctct 15638160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 23094412 - 23094375
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  23094412 aagttatcacaaaatgattgtacaaatatcatttctct 23094375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 26440780 - 26440727
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgt 262  Q
    |||||||||||| |||| |||||||||| || ||| ||| ||||||||||||||    
T  26440780 attggtcaaaaacaatggagagagaaaaaggaagagagagtaaaaatataatgt 26440727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 31221449 - 31221412
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  31221449 aagttgtcacaaattgattgtacaaatatcatttctct 31221412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 38864771 - 38864808
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  38864771 aagttgtcacaaaataattgtacaaatatcatttctct 38864808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 41262653 - 41262690
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  41262653 aagttgtcacaaaataattgtacaaatatcatttctct 41262690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 44368237 - 44368274
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  44368237 aagttgtcacaaattgattgtacaaatatcatttctct 44368274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 45274380 - 45274327
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgt 262  Q
    ||||||| |||||||| ||||||||||| || ||| ||||||| ||||||||||    
T  45274380 attggtccaaaataataaagagagaaaaaggaagagagaataacaatataatgt 45274327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 304
Target Start/End: Complemental strand, 48783838 - 48783809
Alignment:
Q  275 acaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||||||||||||||||||    
T  48783838 acaaaatgattgtacaaatatgatttctct 48783809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 51359825 - 51359862
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  51359825 aagttgtcacaaaatggttgtacaaatatcatttctct 51359862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 54036553 - 54036590
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  54036553 aagttgtcacaaaatggttgtacaaatatcatttctct 54036590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 54801113 - 54801060
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgt 262  Q
    ||||||||||||||||| |||||||||| || ||| ||| ||| ||||||||||    
T  54801113 attggtcaaaaataatggagagagaaaaaggaagagagagtaagaatataatgt 54801060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 3078943 - 3078979
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  3078943 aagttgttacaaaatgattgtacaaatatcatttctc 3078979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 4896528 - 4896572
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  4896528 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 4896572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 6290505 - 6290461
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||| |||||||  |||||||||||| ||||||||    
T  6290505 tgtcaagaagttgttacaaaatagttgtacaaatatcatttctct 6290461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 9032816 - 9032780
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  9032816 aagttgtcacaaattgattgtacaaatatcatttctc 9032780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 12387689 - 12387725
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  12387689 aagttgtcaaaaaatgattgtacaaatatcatttctc 12387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 32365691 - 32365727
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||| |||||||||||| |||||||    
T  32365691 aagttgtcacaaaatggttgtacaaatatcatttctc 32365727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 34116568 - 34116612
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  34116568 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 34116612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 34259850 - 34259814
Alignment:
Q  268 agttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  34259850 agttgtcacaaaatggttgtacaaatatcatttctct 34259814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 47998637 - 47998593
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||| |||||||| |||||||||||| ||||||||    
T  47998637 tgtcaaaaagttgttacaaaatggttgtacaaatatcatttctct 47998593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 51296217 - 51296261
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||| ||| ||||||||||||||| ||||||||    
T  51296217 tgtcaaaaagttgtcataaagtgattgtacaaatatcatttctct 51296261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 7596919 - 7596962
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  7596919 tgtcaagaagttgtcacaaagtgattgtacaaatatcatttctc 7596962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 21273738 - 21273781
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||||||||||||| |||||||||||| |||||||    
T  21273738 tgtcaagaagttgtcacaaaatggttgtacaaatatcatttctc 21273781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 36064066 - 36064029
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  36064066 aagttgtcacaaaatgattgtacaaatatcatttctct 36064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 11223887 - 11223931
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||    
T  11223887 tgtcaagaagttgtcacaaaatggatgtacaaatatcatttctct 11223931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 22852867 - 22852911
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||| || |||||||||||| ||||||||    
T  22852867 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctct 22852911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 6806944 - 6806909
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttct 302  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6806944 aagttgtcacaaaatgattgtacaaatatcatttct 6806909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 295
Target Start/End: Complemental strand, 24319379 - 24319348
Alignment:
Q  264 aagaagttgtcacaaaatgattgtacaaatat 295  Q
    ||||||||||||||||||||||||||||||||    
T  24319379 aagaagttgtcacaaaatgattgtacaaatat 24319348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 14710917 - 14710950
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgattt 300  Q
    ||||||||||||||||||||||||||||| ||||    
T  14710917 aagttgtcacaaaatgattgtacaaatatcattt 14710950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 17775464 - 17775501
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  17775464 aagttgtcacaaaatgattgttcaaatatcatttctct 17775501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 40413373 - 40413410
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  40413373 aagttgtcacaaaataattgtacaaatatcatttctct 40413410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 42443140 - 42443103
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  42443140 aagttgtcactaaatgattgtacaaatatcatttctct 42443103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 43873592 - 43873672
Alignment:
Q  159 gagtagtgatatttgaacaataa---ttgacaacttctttttcctcnnnnnnnattggtcaaaaataatgaagagagaaaa 236  Q
    ||||||||||||||||||||| |   ||||||||||||||||||||       ||| || |||||||||| ||||||||||    
T  43873592 gagtagtgatatttgaacaatcatttttgacaacttctttttcctctctttctattagttaaaaataatggagagagaaaa 43873672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 13884195 - 13884231
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  13884195 aagttgtcaaaaaatgattgtacaaatatcatttctc 13884231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 26294232 - 26294188
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  26294232 tgtcaaaaagttgtcacaaaatggttgtaccaatatcatttctct 26294188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 26307489 - 26307445
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  26307489 tgtcaaaaagttgtcacaaaatggttgtaccaatatcatttctct 26307445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 30112835 - 30112871
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  30112835 aagttatcacaaaatgattgtacaaatataatttctc 30112871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 34970250 - 34970206
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||| |||||| |||||||||||||| ||||||||    
T  34970250 tgtcaaaaagttgttacaaaaggattgtacaaatatcatttctct 34970206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 38844825 - 38844861
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||| |||||||||||| |||||||    
T  38844825 aagttgtcacaaaatggttgtacaaatatcatttctc 38844861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 39021471 - 39021515
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||| |||||||||| |||||||||||| ||||||||    
T  39021471 tgtcaaaaagttatcacaaaatggttgtacaaatatcatttctct 39021515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 39719278 - 39719318
Alignment:
Q  262 tcaagaagttgtcacaaaatgattgtacaaatatgatttct 302  Q
    |||| ||||||||||||| ||||||||||||||| ||||||    
T  39719278 tcaaaaagttgtcacaaattgattgtacaaatatcatttct 39719318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 45101439 - 45101395
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  45101439 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 45101395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 22353199 - 22353236
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  22353199 aagttgtcacaaaatgattgtacaaatatcatttctct 22353236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 17999861 - 17999808
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgt 262  Q
    |||||||||||| |||| |||||||||| || ||| |||||||||| |||||||    
T  17999861 attggtcaaaaacaatgcagagagaaaaaggaagagagaataaaaagataatgt 17999808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 27307266 - 27307303
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  27307266 aagttgtcacaaattgattgtacaaatatcatttctct 27307303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 29795483 - 29795446
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  29795483 aagttgtcacaaaatggttgtacaaatatcatttctct 29795446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 36909878 - 36909915
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  36909878 aagttgtcacaaaatggttgtacaaatatcatttctct 36909915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 3196122 - 3196158
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  3196122 aagttgtcacaaattgattgtacaaatatcatttctc 3196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 4738600 - 4738644
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  4738600 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 4738644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 11229349 - 11229393
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||| ||  ||||||||||| ||||||||    
T  11229349 tgtcaagaagttgtcacaaagtggatgtacaaatatcatttctct 11229393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 18373890 - 18373846
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| | ||||||| ||||||||||||||||||| ||||||||    
T  18373890 tgtcaaaatgttgtcataaaatgattgtacaaatatcatttctct 18373846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 21805821 - 21805857
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||| |||||||||||||||||| |||||||    
T  21805821 aagttgtcactaaatgattgtacaaatatcatttctc 21805857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 31296873 - 31296917
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| | |||||||||||||| |||||||||||| ||||||||    
T  31296873 tgtcaaaacgttgtcacaaaatggttgtacaaatatcatttctct 31296917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 33296099 - 33296143
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  33296099 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 33296143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 50797827 - 50797790
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  50797827 aagttgtcacaaaatgattgtacaaatatcatttctct 50797790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 16836139 - 16836175
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16836139 aagttgtcacaaaatgattgtacaaatatcatttctc 16836175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 40612152 - 40612113
Alignment:
Q  265 agaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  40612152 agaagttgtcacaaaatggttgtacaaatatcatttctct 40612113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 52715014 - 52714979
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttct 302  Q
    ||||||||||||||||||||||||||||| ||||||    
T  52715014 aagttgtcacaaaatgattgtacaaatatcatttct 52714979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 44517988 - 44518022
Alignment:
Q  270 ttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| ||||||||||||||||||    
T  44517988 ttgtcacaaaatgattatacaaatatgatttctct 44518022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 1690482 - 1690445
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  1690482 aagttgtcacaaaatggttgtacaaatattatttctct 1690445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 9011681 - 9011644
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  9011681 aagttgtcacaaaatggttgtacaaatatcatttctct 9011644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 19442542 - 19442505
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  19442542 aagttgtcacaaaatgattgttcaaatatcatttctct 19442505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 27687543 - 27687580
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  27687543 aagttgtcacaaaatggttgtacaaatatcatttctct 27687580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 40596078 - 40596115
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  40596078 aagttgtcacaaaatggttgtacaaatatcatttctct 40596115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 42256496 - 42256459
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  42256496 aagttgtcacaaaatggttgtacaaatatcatttctct 42256459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 8934624 - 8934668
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| |||||||||||||||  |||||||||||| ||||||||    
T  8934624 tgtcaaaaagttgtcacaaaatagttgtacaaatataatttctct 8934668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 11812430 - 11812386
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| || |||||||||||||||||||||| ||| ||||||||    
T  11812430 tgtcaaaaaattgtcacaaaatgattgtacaactatcatttctct 11812386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 31427985 - 31428029
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||| |||||||||| || |||||||||||| ||||||||    
T  31427985 tgtcaagaaattgtcacaaagtggttgtacaaatatcatttctct 31428029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 39669849 - 39669805
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| || ||||||||||||| |||||||||||| ||||||||    
T  39669849 tgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctct 39669805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 40238474 - 40238438
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  40238474 aagttgtcaaaaaatgattgtacaaatatcatttctc 40238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 41507218 - 41507254
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||| |||||||||||| |||||||    
T  41507218 aagttgtcacaaaatggttgtacaaatatcatttctc 41507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 44672058 - 44672102
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||| | ||||||||||||||||||| ||||||||    
T  44672058 tgtcaaaaagttgttaaaaaatgattgtacaaatatcatttctct 44672102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 50226907 - 50226951
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  50226907 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 50226951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 50528092 - 50528128
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  50528092 aagttgtcacaaattgattgtacaaatatcatttctc 50528128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 52669796 - 52669840
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||| |||||||||||||||||| |||||||||||| | ||||||    
T  52669796 tgtccagaagttgtcacaaaatggttgtacaaatatcacttctct 52669840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 8339 - 8379
Alignment:
Q  264 aagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  8339 aagaagttgtcacaaaatggttgtacaaatataatttctct 8379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 26660439 - 26660483
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||    
T  26660439 tgtcaagaagttgtcacaaaatggatgtacaaatatcatttctct 26660483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 26932031 - 26932075
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||    
T  26932031 tgtcaagaagttgtcacaaaatggatgtacaaatatcatttctct 26932075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 27440515 - 27440479
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27440515 aagttgtcacaaaatgattgtacaaatatcatttctc 27440479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 36713206 - 36713250
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||| || |||||||||||| ||||||||    
T  36713206 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctct 36713250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 19127167 - 19127124
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||||||| || |||||||||||| |||||||    
T  19127167 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctc 19127124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 3771034 - 3771083
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctctgaact 309  Q
    |||||| |||||||||||||||| ||||||| |||| |||||||| ||||    
T  3771034 tgtcaaaaagttgtcacaaaatggttgtacagatatcatttctctaaact 3771083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 3960204 - 3960241
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  3960204 aagttgtcaaaaaatgattatacaaatatgatttctct 3960241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 14914408 - 14914371
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  14914408 aagttgtcacaaaatggttgtacaaatatcatttctct 14914371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 42699098 - 42699057
Alignment:
Q  262 tcaagaagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  42699098 tcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 42699057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 3109622 - 3109658
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  3109622 aagttgtcacaaattgattgtacaaatatcatttctc 3109658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 10469901 - 10469956
Alignment:
Q  209 attggtcaaaaataatgaagagagaaaatggtagat--agaataaaaatataatgt 262  Q
    |||||||||||| |||| |||||||||| |||||||  |||||||||| |||||||    
T  10469901 attggtcaaaaacaatggagagagaaaaaggtagataaagaataaaaacataatgt 10469956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 11768018 - 11768062
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||| ||  ||||||||||| ||||||||    
T  11768018 tgtcaagaagttgtcacaaagtggatgtacaaatatcatttctct 11768062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 14323996 - 14324040
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||||||  ||| ||||||| ||||||||    
T  14323996 tgtcaagaagttgtcacaaaatggatgtgcaaatatcatttctct 14324040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 16143426 - 16143390
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||| |||||||||||| |||||||    
T  16143426 aagttgtcacaaaatggttgtacaaatatcatttctc 16143390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 17063901 - 17063865
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  17063901 aagttgtcaaaaaatgattgtacaaatatcatttctc 17063865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 23991162 - 23991206
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||| |||||||||||||| || |||||||||||| ||||||||    
T  23991162 tgtcaggaagttgtcacaaagtggttgtacaaatatcatttctct 23991206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 38500986 - 38500942
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| || ||||||||||||| |||||||||||| ||||||||    
T  38500986 tgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctct 38500942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 48945890 - 48945846
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||| || |||||||||||| ||||||||    
T  48945890 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctct 48945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 55344324 - 55344368
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||    
T  55344324 tgtcaagaagttatcacaaaatggttgtacaaatatcatttctct 55344368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 3958051 - 3958090
Alignment:
Q  265 agaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  3958051 agaagttgtcacaaattgattgtacaaatatcatttctct 3958090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 20380917 - 20380960
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||||||| || |||||||||||| |||||||    
T  20380917 tgtcaagaagttgtcacaaagtggttgtacaaatatcatttctc 20380960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 31206879 - 31206921
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttct 302  Q
    |||||| || |||||||||||||||||||||||||| ||||||    
T  31206879 tgtcaaaaatttgtcacaaaatgattgtacaaatatcatttct 31206921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 7249 - 7286
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  7249 aagttgtcagaaaatgattgtacaaatatcatttctct 7286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 1765440 - 1765403
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  1765440 aagttgtcacaaaatgaatgtacaaatatcatttctct 1765403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 8254063 - 8254026
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  8254063 aagttgtcacaaaatggttgtacaaatatcatttctct 8254026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 34021498 - 34021535
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  34021498 aagttgtcacaaattgattgtacaaatatcatttctct 34021535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 35074125 - 35074162
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  35074125 aagttgtcccaaaatgattgtacaaatatcatttctct 35074162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 43169777 - 43169814
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  43169777 aagttgtcacaaaatggttgtacaaatatcatttctct 43169814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 47683837 - 47683800
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  47683837 aagttgtcacaaaatggttgtacaaatatcatttctct 47683800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 48405446 - 48405409
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  48405446 aagttgtcacaaaatggttgtacaaatatcatttctct 48405409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 49196732 - 49196695
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  49196732 aagttgtcacaaaatggttgtacaaatatcatttctct 49196695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 52454129 - 52454166
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  52454129 aagttgtcacaaattgattgtacaaatatcatttctct 52454166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 462436 - 462472
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||| |||||||||||| |||||||    
T  462436 aagttgtcacaaaatggttgtacaaatatcatttctc 462472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 11327144 - 11327108
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    |||||||||||||||| |||||||||||| |||||||    
T  11327144 aagttgtcacaaaatggttgtacaaatatcatttctc 11327108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 18169200 - 18169156
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  18169200 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 18169156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 23163192 - 23163228
Alignment:
Q  267 aagttgtcacaaaatgattgtacaaatatgatttctc 303  Q
    ||||||||||||| || ||||||||||||||||||||    
T  23163192 aagttgtcacaaattggttgtacaaatatgatttctc 23163228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 30796642 - 30796686
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||||||||||||||||| || |||| ||||||| ||||||||    
T  30796642 tgtcaagaagttgtcacaaagtggttgtgcaaatatcatttctct 30796686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 34733248 - 34733300
Alignment:
Q  210 ttggtcaaaaataatgaagagagaaaatggtagatagaataaaaatataatgt 262  Q
    ||||||||||| |||| ||||||||||  | ||| ||||||||||||||||||    
T  34733248 ttggtcaaaaacaatggagagagaaaaatgaagagagaataaaaatataatgt 34733300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 43333698 - 43333742
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  43333698 tgtcaaaaagttgtcataaaatgactgtacaaatatcatttctct 43333742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 219692 - 219736
Alignment:
Q  260 tgtcaagaagttgtcacaaaatgattgtacaaatatgatttctct 304  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  219692 tgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 219736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University